Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_J10
(547 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 29 0.34
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 29 0.59
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz... 28 1.0
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 5.5
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch... 25 5.5
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom... 25 5.5
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 5.5
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz... 25 7.3
SPAC6G9.03c |mug183||histone chaperone Rtt106-like|Schizosacchar... 25 9.6
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch... 25 9.6
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb... 25 9.6
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 29.5 bits (63), Expect = 0.34
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = -3
Query: 416 LSKYQHSXEEILNILQQHKEEVAKQEIDD---ELVAELLR 306
L Y+H +ILNI+++H V K ID+ EL +++ R
Sbjct: 120 LDPYRHESVKILNIIKKHAPVVKKASIDECFIELTSDVKR 159
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 28.7 bits (61), Expect = 0.59
Identities = 16/65 (24%), Positives = 36/65 (55%)
Frame = -3
Query: 398 SXEEILNILQQHKEEVAKQEIDDELVAELLRNDLFVSLVGTPLYPKMLSYIISREGGSED 219
S + N+ +QH++++A E D+++ ++ +D +++ P LSY +S+E +
Sbjct: 103 SSNQPTNVYKQHQDDLAPPEADNQITRDVPISDEKTNILFFPSPSIDLSY-VSKEVKQKT 161
Query: 218 APYSV 204
YS+
Sbjct: 162 GQYSL 166
>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
S7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 27.9 bits (59), Expect = 1.0
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = -3
Query: 392 EEILNILQQHKEEVAKQEIDDELVAELLRNDLFVSLVGTPLYPKMLSYIISREGGSEDAP 213
E +LN LQ E+ A + EL ++ + L+GT L+P S I+ G D P
Sbjct: 64 ENLLNQLQDSVEQSASDDFMGELEKKIEVENEEPPLMGTNLWPSPSSSIV----GLIDRP 119
Query: 212 YSVPWATRELL 180
+ V + L+
Sbjct: 120 FQVDSTVQHLV 130
>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 5.5
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -3
Query: 284 VGTPLYPKMLSYIISREGGSEDAPYSVP 201
+ P+ K SY++ R GG + + +P
Sbjct: 329 IAMPINQKFYSYLVKRNGGEGEPEFRLP 356
>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
2|||Manual
Length = 257
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 163 PRPGTSVSWXMASRRPCEGSLSPFS 89
PRP + ++ +++ CE LSPFS
Sbjct: 68 PRPSKTFAFRSSAKLNCEFRLSPFS 92
>SPBPB2B2.16c |||MFS family membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 5.5
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -3
Query: 284 VGTPLYPKMLSYIISREGGSEDAPYSVP 201
+ P+ K SY++ R GG + + +P
Sbjct: 329 IAMPINQKFYSYLVKRNGGEGEPEFRLP 356
>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 5.5
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -3
Query: 284 VGTPLYPKMLSYIISREGGSEDAPYSVP 201
+ P+ K SY++ R GG + + +P
Sbjct: 329 IAMPINQKFYSYLVKRNGGEGEPEFRLP 356
>SPCC553.07c |mug40||DinB translesion DNA repair
polymerase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 25.0 bits (52), Expect = 7.3
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -3
Query: 458 VVPDAVVNAIWILLLSKYQHSXEEILNILQQHKEEVAKQEIDD 330
+ PD VV L LS+Y +EI N+L Q+ + ID+
Sbjct: 188 ICPDLVVIP---LNLSEYAIKSKEIQNVLAQYDSNLCPASIDE 227
>SPAC6G9.03c |mug183||histone chaperone
Rtt106-like|Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 24.6 bits (51), Expect = 9.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 182 LKANYLAEAGHLRLMXDGVPPPLRGFSQSVLY 87
++ANY A+ GHL + G+ L GF + +L+
Sbjct: 203 VEANYKAKDGHLFFLRTGI---LWGFRKPILF 231
>SPAC22F8.12c |shf1||small histone ubiquitination factor
Shf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 165
Score = 24.6 bits (51), Expect = 9.6
Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = -3
Query: 455 VPDAVVNAIWILLLSKYQHSXEEILNILQQHKEEV-AKQEIDDELVAELLRNDLFV 291
+PD+ +++ S ++S + +LN+ QQ+ ++V ++I ++ E LR+D V
Sbjct: 98 LPDSSLSSKLQSCKSACENSSQSLLNVEQQYAQQVHFWEKIRTDIYREGLRSDAAV 153
>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 24.6 bits (51), Expect = 9.6
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -3
Query: 290 SLVGTPLYPKMLSYIISREGGSEDAPYSVP--WATRELLKANYLAEAGHLRLMXDGVPP 120
SL L P + I S GG+ PYS+ + R++L + G DGVPP
Sbjct: 227 SLTLGALAPHRVGRIASISGGARSHPYSIALRFTQRQILMNDPYWNRG---FYYDGVPP 282
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,785,160
Number of Sequences: 5004
Number of extensions: 30547
Number of successful extensions: 119
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -