Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_J09
         (848 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0161 + 23203786-23203848,23204141-23204180,23204865-232050...    31   0.88 
03_02_0984 + 12947444-12947530,12949071-12949127,12949833-129499...    31   1.5  

>04_04_0161 +
           23203786-23203848,23204141-23204180,23204865-23205016,
           23205270-23205406,23206356-23206396,23206500-23207098,
           23207599-23207679,23208146-23208208,23209141-23209197
          Length = 410

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +2

Query: 596 NYLHVIINKSYDLQVETKDIKRAHLVICISLFTCFNQCRPWIIYSAS 736
           N  H++ N+   +Q+  +  + AH V+C+    C+N  RP I+ ++S
Sbjct: 40  NCQHILANRQKPIQLSHETTQCAHPVVCMQSKKCYN--RPEIVLASS 84


>03_02_0984 +
           12947444-12947530,12949071-12949127,12949833-12949904,
           12950050-12950112,12950955-12951131,12951503-12951628,
           12951711-12951777,12952019-12952215,12952617-12952691,
           12954524-12954554,12954714-12954802,12955120-12955188,
           12955306-12955425,12955963-12956081,12956303-12956441,
           12956538-12957038,12957293-12957592,12957694-12957875,
           12958277-12958388,12958953-12959072
          Length = 900

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 22/106 (20%), Positives = 40/106 (37%)
 Frame = +3

Query: 336 IFAMNTADFTDFIVPRAATVNYIDPYIFNVFYIA*KYGNISNQQKRKMCFIYLTPMPDSI 515
           IF  N A+        + T  ++  Y+ +   +   + +  N   RK C  YL  +P   
Sbjct: 275 IFPTNKAELFHLSDKNSHTGRHLLSYMTSHVKMDFIFSSFKNGDSRKECAFYLVSLPVPF 334

Query: 516 GMFKVFC*TLFTQILWXXXXXXXXXXQTIYTLSLIKVMTYKLKLKT 653
               +   T+F+Q+L            T+  + L K+M   +   T
Sbjct: 335 RYEYLMAETIFSQLLLLPNPPFRPIYYTLVIIDLCKIMAVLMVYST 380


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,715,668
Number of Sequences: 37544
Number of extensions: 312387
Number of successful extensions: 497
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)