Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_J09
         (848 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29121-1|CAA82387.3|  324|Caenorhabditis elegans Hypothetical pr...    29   5.5  
AC025726-29|AAK73931.2| 1098|Caenorhabditis elegans Hypothetical...    28   7.3  

>Z29121-1|CAA82387.3|  324|Caenorhabditis elegans Hypothetical
           protein ZK757.1 protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +2

Query: 392 CKLHRSLYI*RFLHCLKIWKHLK-SAKEKNVFYLFDTNARLHRNV*SFLLNFIYTNSMEI 568
           C +H  +Y   +LH   +  ++  S  + N+F  F +N      +  F L FI+ NS  I
Sbjct: 261 CFIHFRIYPSVWLHVSLVCNNISFSLADTNLFNAFTSNNSPRVTLHYFELFFIHRNSENI 320

Query: 569 KF 574
           KF
Sbjct: 321 KF 322


>AC025726-29|AAK73931.2| 1098|Caenorhabditis elegans Hypothetical
           protein Y71G12B.5 protein.
          Length = 1098

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 799 TVSAKSSAAFSDLTKT*TKFSGCRINYPRSTLVE 698
           T++ KSSA   DL      F GCR  Y +   VE
Sbjct: 378 TLATKSSAKIGDLFAESFVFKGCRATYDKQANVE 411


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,065,911
Number of Sequences: 27780
Number of extensions: 344191
Number of successful extensions: 622
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)