Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_J07
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|...    42   4e-05
SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    33   0.019
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    30   0.24 
SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy...    29   0.41 
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    28   0.72 
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   2.2  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    27   2.2  
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    26   2.9  
SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ...    25   5.1  
SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom...    25   5.1  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    25   5.1  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    25   8.9  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    25   8.9  

>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 161

 Score = 42.3 bits (95), Expect = 4e-05
 Identities = 26/91 (28%), Positives = 45/91 (49%)
 Frame = -3

Query: 380 VFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIXNYLEKIYEVPVVDVRTKINMGKFK 201
           V+ PN    L R    Q P    F   + + K+D+ +YL+ +Y + VV V+++I  GK  
Sbjct: 10  VYFPNITFTLCRGLNLQ-PKFAVFRVPLHVNKFDVRDYLQHVYNLKVVSVKSRIYQGKLF 68

Query: 200 KDVVKGYVIKEDDVKVAFVTLPKTMTFKYPD 108
           ++ + G V +    K   V + +   F YP+
Sbjct: 69  RNQL-GQVKRPQSEKRVIVEMEE--PFVYPN 96


>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 33.5 bits (73), Expect = 0.019
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 323 NIVHFHCSMEMTKYDIXNYLEKIYEVPVVDVRTKINMGKFKKDVVK 186
           N + FH  ++  K+ I N ++K+Y V  V + T I     KK  VK
Sbjct: 79  NTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKAFVK 124


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -3

Query: 323 NIVHFHCSMEMTKYDIXNYLEKIYEVPVVDVRTKINMGKFKKDVVK 186
           N + FH  ++  K+ I   + K+Y V  V + T I     KK  VK
Sbjct: 79  NTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAFVK 124


>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 29.1 bits (62), Expect = 0.41
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 510 IRPADDLSAKYFNIVYYPLLNTSNFNNVHTVVPHLS 403
           I P  +LS  +FN+ + PL   ++F+   T  PH S
Sbjct: 283 ISPRPNLSTHHFNLGFQPLSQQTSFSGSSTQNPHSS 318


>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 104 FEKSINEEEXHAKSLDESK-KNFRKYID 24
           FE  I     H K LDE++  N+RKY+D
Sbjct: 263 FESEIKRPYFHVKELDEAQLVNWRKYLD 290


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/37 (24%), Positives = 24/37 (64%)
 Frame = +1

Query: 16  YYRSMYFLKFFFDSSNDFACXSSSLILFSNRSGYLNV 126
           Y+R+++ ++ +F + + F C +SS  + S+ +  ++V
Sbjct: 6   YFRTIFLIQLYFFNYSTFGCSASSTSVQSDTTNQVSV 42


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/37 (24%), Positives = 24/37 (64%)
 Frame = +1

Query: 16  YYRSMYFLKFFFDSSNDFACXSSSLILFSNRSGYLNV 126
           Y+R+++ ++ +F + + F C +SS  + S+ +  ++V
Sbjct: 6   YFRTIFLIQLYFFNYSTFGCSASSTSVQSDTTNQVSV 42


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -3

Query: 113 PDLFEKSINEEEXHAKSLDESKKNF---RKY 30
           PDL E+S  +EE  + S  E K NF   RKY
Sbjct: 141 PDLKEESSTDEEMDSLSAAEEKPNFLQKRKY 171


>SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 358

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
 Frame = -3

Query: 410 IYQRGNPQLRVFLPNFWMKLVRPHPKQLP-NIVHFHCSMEMTKYDIXNYLEKIYEVPVVD 234
           +Y  G+ +L++    F    + P  K+L  NIV     +E+T  D+ NY   I +  + D
Sbjct: 58  LYGPGSEKLKIDQRTF----LTPSSKKLQINIVSSLHHLEITPSDVGNYDRVIMQELLKD 113

Query: 233 VRTKINMGKFKKDVVKGYVIKEDD--VKVAFVTLPKTM 126
           V     +    K + K  VI   D   + A   L +TM
Sbjct: 114 VAQSAQVDLQAKKIFKVVVINVADELTRDAQAALRRTM 151


>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 184

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 347 RPHPKQLPNIVHFHCSMEMTKYDIXNYLEKIYEVPV 240
           RP  ++LP    ++ SM  T + +     +I++VPV
Sbjct: 107 RPFIRRLPEFKFWYSSMRATLFALVASFFRIFDVPV 142


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -3

Query: 149 FVTLPKTMTFKYPDLFEKSINEEEXHAKSLDESKKNFRKY 30
           F+T+ +T+   YPD+ +K        ++ +  S   F KY
Sbjct: 418 FITVSRTLVPNYPDIVQKLGQTSIQLSRLISNSMDCFEKY 457


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 239 VDVRTKINMGKFKKDVVKGYVIKEDDVKVA 150
           V+ R ++N+G     V K Y IKED  K A
Sbjct: 263 VESRPELNVGTIDFKVGKDYWIKEDPPKPA 292


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -3

Query: 371 PNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIXNYLEKIYEV 246
           P+  + LV  +P+ +PN+      +++ +YDI   L   Y +
Sbjct: 605 PSSKVNLVDTYPQTIPNVSKPSTPIDVPEYDISACLPGFYRL 646


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,885,559
Number of Sequences: 5004
Number of extensions: 35044
Number of successful extensions: 106
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)