Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_J07
         (517 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0070 + 13045122-13045715                                         34   0.059
05_07_0307 - 29111643-29112104,29112222-29113214                       29   2.2  
09_06_0371 + 22615809-22617431,22618312-22618422,22619361-226194...    28   5.1  
07_03_0923 - 22617627-22617860,22618486-22618542,22618612-226187...    27   6.8  
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376...    27   8.9  
05_01_0524 - 4522488-4523762,4524534-4524644,4524794-4524889           27   8.9  

>07_03_0070 + 13045122-13045715
          Length = 197

 Score = 34.3 bits (75), Expect = 0.059
 Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
 Frame = -3

Query: 380 VFLPNFWMKLVRPHPKQLPNIVHFHCSM--EMTKYDIXNYLEKIYEVPVVDVRTKINMGK 207
           +   N  +KL+ P P  L ++  F        +K DI   LE +Y   V +VRT +NM +
Sbjct: 10  IHFANLPLKLMLP-PAPLSSVQEFAVKTVPSASKVDIRRCLESMYGFSVAEVRT-LNM-E 66

Query: 206 FKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLF 102
            KK     ++  + D K A+VTL   +    PDLF
Sbjct: 67  GKKLRRGPFLAAKPDYKKAYVTLRAPLPVS-PDLF 100


>05_07_0307 - 29111643-29112104,29112222-29113214
          Length = 484

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 3/120 (2%)
 Frame = -3

Query: 398 GNPQLRVFLPNFWMKLVRP--HPKQLPNIVHF-HCSMEMTKYDIXNYLEKIYEVPVVDVR 228
           G  ++ VF  N+  +L +    P ++   +H  +C+ E  +    NY    Y V   ++ 
Sbjct: 349 GEERIIVFTTNYKERLDQALMRPGRMDMHIHMGYCTPEAFRILASNYHSIDYHVTYPEIE 408

Query: 227 TKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEXHAKSLDESK 48
             I         V   +++ DD+ VA + L + +  K  D  E     ++ + K  +E+K
Sbjct: 409 ELIKEVMVTPAEVAEALMRNDDIDVALLGLLELLKSKIKDASETKAESKDAN-KQTEENK 467


>09_06_0371 +
           22615809-22617431,22618312-22618422,22619361-22619453,
           22619562-22619661,22619754-22619834,22620774-22621047,
           22621254-22622069,22622921-22623029,22623509-22623602,
           22623881-22623939,22624150-22624197
          Length = 1135

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 389 QLRVFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDI 276
           +L VF P  W  ++  H ++  NI+     +E+   DI
Sbjct: 547 RLTVFYPTLWKTVIASHSQECENIIVLRKMLELRTGDI 584


>07_03_0923 -
           22617627-22617860,22618486-22618542,22618612-22618768,
           22618875-22619014,22619642-22619777,22619874-22620142,
           22620272-22620492,22620648-22620707,22620859-22620915,
           22621008-22621405,22621929-22622000,22622098-22622169,
           22622246-22622317,22622574-22622645,22622738-22622867,
           22623065-22623170
          Length = 750

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/72 (23%), Positives = 30/72 (41%)
 Frame = -3

Query: 392 PQLRVFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIXNYLEKIYEVPVVDVRTKINM 213
           P+ R  +      L R H K L  I H  CS+   +Y   +  ++I    V + R  +  
Sbjct: 657 PEFRPSMSEVVQDLTRMHEKGLLCIAHLICSVSTGEYTRVHKTDEIQSDFVKNRRFNVAP 716

Query: 212 GKFKKDVVKGYV 177
             F  ++  G++
Sbjct: 717 QWFSSEISMGFI 728


>06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,
            3764013-3764961,3766967-3767064,3768144-3768284,
            3768758-3768874,3768924-3769013,3769014-3771818
          Length = 1632

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 407  YQRGNPQLRVFLPNFWMKLVRPHPKQL 327
            + R N   R+F+P    KL+RP+ K+L
Sbjct: 1010 HSRSNEFKRLFVPEAIRKLIRPYDKEL 1036


>05_01_0524 - 4522488-4523762,4524534-4524644,4524794-4524889
          Length = 493

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -2

Query: 501 ADDLSAKYFNIVYYPL-LNTSNFNNVHTVVPHLSKRKP 391
           +D+   ++FN   +   +  +NF + HT + H+SKR+P
Sbjct: 319 SDEYDRRFFNPRNFTSSVADTNFVHQHTQIRHISKRRP 356


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,225,901
Number of Sequences: 37544
Number of extensions: 195772
Number of successful extensions: 385
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)