Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_J04
(627 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0581 - 18684273-18685814,18686156-18686200,18686393-18686683 33 0.19
03_05_0777 + 27636342-27637115 32 0.32
12_01_0630 - 5203802-5204111,5204896-5204900 29 2.3
01_06_0453 + 29501600-29502403 29 2.3
04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539 29 3.0
01_06_1285 - 35995943-35996087,35996909-35997697,35997802-359978... 29 3.0
03_03_0025 + 13848450-13849420,13850921-13851131,13851327-138514... 29 4.0
04_04_0347 + 24564589-24565296 28 5.3
12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406 28 7.0
06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176 28 7.0
11_06_0611 + 25461469-25461655,25461670-25462238 27 9.2
10_05_0043 + 8503979-8504407,8506484-8506624,8506865-8506975,850... 27 9.2
08_01_0648 + 5602454-5602513,5602913-5603000,5603128-5604248,560... 27 9.2
06_03_0857 + 25443251-25444429 27 9.2
04_04_0047 + 22346962-22347437,22347874-22348036,22348143-223482... 27 9.2
>09_04_0581 - 18684273-18685814,18686156-18686200,18686393-18686683
Length = 625
Score = 33.1 bits (72), Expect = 0.19
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 284 PHSTDRHSDH*VHPRAVRSLPLANKYLYNA 373
P STD H H VHP + S P A+++L +A
Sbjct: 174 PSSTDHHRRHKVHPAFLHSAPSADRFLASA 203
>03_05_0777 + 27636342-27637115
Length = 257
Score = 32.3 bits (70), Expect = 0.32
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 250 RGAHVRRRPRATTLHGQAQRSLSPPPRGPKPA 345
R A + R AT L + +R+L PPP P PA
Sbjct: 187 RDAALSNRAEATALRAELERALQPPPPPPPPA 218
>12_01_0630 - 5203802-5204111,5204896-5204900
Length = 104
Score = 29.5 bits (63), Expect = 2.3
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +1
Query: 253 GAHVRRRPRATTLHGQAQRSLSPPPRGPKPAARQ----*IFVQRGRAARLGASEG 405
G VRRR R TL + R++S R P+P +R+ + QR R GAS G
Sbjct: 2 GTRVRRRWRDGTLRPPSCRAISRRYRSPRPRSREDDTDRVDEQRLRVLAAGASPG 56
>01_06_0453 + 29501600-29502403
Length = 267
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 220 KVLVDDSHSERGAHVRRRP-RATTLHGQAQRSLSPPPRGPKPA 345
KV V S S + R P +A Q QR+ PPPR P PA
Sbjct: 165 KVAVKKSSSSEVRKLERAPAQAQRQVLQVQRAQPPPPRAPAPA 207
>04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539
Length = 585
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +1
Query: 232 DDSHSERGAHVRRRPRATTLHGQAQRSLSPPPRGPKPAARQ*IFVQRGRAA 384
DD H+E + RR R+ + Q L+PPP P +Q I G AA
Sbjct: 211 DDDHAEAARNGVRRWRSGSGQQQPSTILAPPPPTPTRQKQQGIVFGGGAAA 261
>01_06_1285 -
35995943-35996087,35996909-35997697,35997802-35997871,
35997989-35998220
Length = 411
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/76 (25%), Positives = 29/76 (38%)
Frame = +1
Query: 232 DDSHSERGAHVRRRPRATTLHGQAQRSLSPPPRGPKPAARQ*IFVQRGRAARLGASEGAG 411
D S RG H +R A ++ SPP P + + GR + A G G
Sbjct: 209 DGYRSSRGRHAQRAAAAAAQEELSREETSPPTASTSPETLEALIKADGRV--MAAVTGGG 266
Query: 412 GARRD*IILESRG*GS 459
R ++++ GS
Sbjct: 267 RTRASSVLMQLISCGS 282
>03_03_0025 +
13848450-13849420,13850921-13851131,13851327-13851459,
13851576-13851832
Length = 523
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 244 SERGAHVRRRPRATTLHGQAQRSLSPPPRGPK 339
S G+ + RRP+ L Q+ S PPP P+
Sbjct: 119 SSGGSRLARRPKKGILKAQSSSSAPPPPPSPE 150
>04_04_0347 + 24564589-24565296
Length = 235
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 529 GQYSHRHGSGTASAPTHASRGPHAHGSPA 615
G + HRH TA+AP HA H +PA
Sbjct: 100 GHHHHRHA--TATAPAHAPSSHHDRHAPA 126
>12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406
Length = 351
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +1
Query: 280 ATTLHGQAQRSLSPPPRGPKPA---ARQ*IFVQRGRAARLGASEGAGGARRD 426
AT ++ + SPPP P PA + + F RAAR SE + GA +
Sbjct: 105 ATARRKRSASARSPPPARPPPATNTSAEERFPASPRAARKDLSEASSGAEEE 156
>06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176
Length = 427
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 362 NIYWRAAGFGPRGGGLSDRCACPWSVVARGRR 267
N++ + G G GGG + CPW+ G R
Sbjct: 40 NVFDQEVGVGGEGGGGGEGSGCPWARPCDGCR 71
>11_06_0611 + 25461469-25461655,25461670-25462238
Length = 251
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 247 ERGAHVRRRPRATTLHGQAQRSLSPPPRGPKPAA 348
+ G + RR A T+H A PPPR P A+
Sbjct: 150 QSGLQIWRREGAPTIHAVAPPRRPPPPRLPSRAS 183
>10_05_0043 +
8503979-8504407,8506484-8506624,8506865-8506975,
8507746-8508330
Length = 421
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = +2
Query: 245 ASAGRTSDAGPAPPHSTDRHSDH*VHPRAVRSLPLANKYLYNAVAP 382
A+A + AGP P + D H H HP A P A YN AP
Sbjct: 5 AAASHAAAAGPPP--AADPHHPHYPHPYAGYPYPYA---AYNPAAP 45
>08_01_0648 +
5602454-5602513,5602913-5603000,5603128-5604248,
5605146-5605217,5605218-5605373,5605458-5605748
Length = 595
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = +1
Query: 271 RPR-ATTLHGQAQRSLSPPPRGPKPAARQ*IF--VQRGRAARLGASEGAGG 414
RPR A Q+ R S P P A +F +Q+G A + G S G GG
Sbjct: 22 RPRFAKKASPQSLREFSSPTSSPSIACSGNLFDGMQQGAAGQAGPSGGGGG 72
>06_03_0857 + 25443251-25444429
Length = 392
Score = 27.5 bits (58), Expect = 9.2
Identities = 21/55 (38%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Frame = +1
Query: 265 RRRPRATTLHGQAQRSLSPPPRGPKPA--ARQ*IFVQRGRAAR-LGASEGAGGAR 420
RRR A A S +PPP P A + VQ GR R G G GG R
Sbjct: 212 RRRRAAAAAAPSAPASEAPPPPPPSSALVPEPELQVQGGRGERGRGRGRGRGGGR 266
>04_04_0047 +
22346962-22347437,22347874-22348036,22348143-22348217,
22348302-22348402,22348488-22348603,22348693-22348904,
22349033-22349124,22349319-22349433,22349654-22349757,
22349881-22349926,22350007-22350071,22350192-22350272,
22350356-22350410,22350623-22350711,22350802-22350889,
22351011-22351091
Length = 652
Score = 27.5 bits (58), Expect = 9.2
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Frame = +1
Query: 238 SHSERGAHVRRRPRATTLHGQAQRSLS--PPPRGPKPAARQ*IFVQRGR-----AARLGA 396
S S R + P A+ HGQAQR L+ PP RG + + V RGR A + A
Sbjct: 7 SSSTRATSLVAIPGASCPHGQAQRLLAFRPPRRGSQWRG---LCVSRGRHGATVAMAMPA 63
Query: 397 SEGAGGARRD*IILESRG*G 456
++ AG RR +++ G G
Sbjct: 64 AQAAG--RRARVLVAGGGIG 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,955,704
Number of Sequences: 37544
Number of extensions: 301103
Number of successful extensions: 1280
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1275
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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