Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_J02
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   2.0  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    26   6.0  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   6.0  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   8.0  

>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 429  ASIEVTNVSFCHPVHHDLTLTCHNHHISSKTSYYACHQISD 551
            + IE+ N +F   +   + L+ H   I+ K SY     ISD
Sbjct: 3342 SKIEIQNRNFSFQIPSSIPLSSHMRIIADKPSYVTMQTISD 3382


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 465 PVHHDLTLTCHNHHISSKTSYYACHQI 545
           P   DL+L+ H   + S+   YACH I
Sbjct: 877 PTLMDLSLSYHAEELYSRCIDYACHNI 903


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 465 PVHHDLTLTCHNHHISSKTSYYACHQISDP*NDLHH 572
           P+ HD+  +  ++ + S TSY+AC     P    HH
Sbjct: 104 PLPHDVA-SHPSYMVQSPTSYHACSNNQSPFPHSHH 138


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = +3

Query: 423 KHASIEVTNVSFCHPVHHDLTLTCHNHHISSKTSYYACHQISDP 554
           K+  ++ T V  C P  H      H  H+S  TSY       DP
Sbjct: 112 KNCGLDNTCV-LCAPCFHATNHEGHETHVSISTSYSGICDCGDP 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,461
Number of Sequences: 5004
Number of extensions: 41639
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)