Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_J02
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71266-8|CAA95846.2|  729|Caenorhabditis elegans Hypothetical pr...    32   0.35 
AC006679-8|AAK84470.1|  630|Caenorhabditis elegans Hypothetical ...    28   5.7  

>Z71266-8|CAA95846.2|  729|Caenorhabditis elegans Hypothetical
           protein R06C7.9 protein.
          Length = 729

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
 Frame = +3

Query: 459 CHPVHHDLTLTCHNHHISSKTSYYACHQISD--P*NDLHHDHETLNDASYLNNPSSYHKE 632
           CH   H+L   C + H S     + C+  S+  P     HDH  ++  +  N  ++    
Sbjct: 635 CHASFHNLQALCSHRHESHGKEMFQCNNCSETLPNYRALHDHNMMHCRN--NRSTNETTT 692

Query: 633 ILTSAPSLIYDYCDTLRIKV 692
              S   + YDY D ++I V
Sbjct: 693 RRYSEEDINYDYMDNVQIFV 712


>AC006679-8|AAK84470.1|  630|Caenorhabditis elegans Hypothetical
           protein R13A5.9 protein.
          Length = 630

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = +1

Query: 370 SQSTTKRPISLCFIICVANMLA 435
           +++TT++  +LCF++CV  MLA
Sbjct: 295 AENTTEKNYTLCFVMCVIFMLA 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,458,011
Number of Sequences: 27780
Number of extensions: 232540
Number of successful extensions: 537
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)