Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_I20
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    40   6e-04
SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    31   0.30 
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    27   3.6  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    27   4.8  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    27   4.8  
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo...    26   6.4  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    26   8.4  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   8.4  

>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 221

 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = -2

Query: 563 YLPVLEANWKWLTLFQVINLAFIPPMLRVLFMNIVGFGWAMFLASK 426
           Y P L+AN+      Q+ N  F+P +L+V+F N V   W  +L+ K
Sbjct: 168 YWPTLKANYILWPAVQLFNFTFVPLVLQVIFANAVSMVWTAYLSLK 213


>SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 206

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 715 FPEESASFPLAKKLLLERLIFAPLMQAFSLYSLARFEGK 599
           FP E  +  + K++LL++ +FAP   AF    +   EGK
Sbjct: 94  FPIEKGAINVVKRVLLDQAVFAPFGTAFFFSWMTLAEGK 132


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 751 VPHYFYETVERLFPEESASF-PLAKKLLLERLIFAPLMQAFSLYSLARFEGK 599
           +P+     +++++   S SF P A K  +E  +   LM   S+Y    FEGK
Sbjct: 504 IPNELPMVLKQIYYSRSESFKPSAIKEFIEYFLCDQLMNCLSVYYSKYFEGK 555


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 630 ENACINGAKIKRSNNNFFASGNDADSS 710
           ENA  N      + NN+FA G +AD S
Sbjct: 719 ENASNNATDFSTAFNNYFADGPNADHS 745


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 175 LPVLDEYKLLIFTFNNILHN 234
           + V DEY L+++T +N LH+
Sbjct: 593 MSVCDEYSLVVYTADNFLHH 612


>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -1

Query: 585 SEATFCIVLTSLRSQLEMAYIVPSHKFSIYTSNVESSVHEHCWVWLGNV-LSKQK 424
           SEA   I+   L  Q+ +  +V   +F    S ++S+++E C   +G +  S+QK
Sbjct: 327 SEANKLIIGNGLDPQVTLGPVVSKTQFEKIVSYIQSAINEGCKCVVGGLPRSEQK 381


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = -1

Query: 219 VECKNK*LVFIKNWKFITKXRLFRTNCLNNLFSQQNF---FIFRFVVFYNQPVFFKKP 55
           V+CK K    I  WK+I     F    ++N +  ++F   F+ R  V  NQ    + P
Sbjct: 6   VKCKKKLTSTIGTWKYIQACIFFAIILISNFYGLKSFTDGFLLRRAVL-NQTSLCENP 62


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 136 QTICSKQPXFRYK-LPVLDEYKLLIFTFNNILHNSLRNTYFI 258
           QT+C     F Y  LP+ ++ K ++ +  N+   SL+ TY +
Sbjct: 284 QTLCCFSLNFIYHGLPICEKSKHILMSSINLTLGSLKKTYTV 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,642,924
Number of Sequences: 5004
Number of extensions: 74653
Number of successful extensions: 202
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)