Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_I20
         (903 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   1.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.8  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   5.0  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -1

Query: 450 LGNVLSKQKTQAESEE--RRLNFNINFVFHG 364
           +G V S  K++   E+    LNFN+N+V  G
Sbjct: 36  IGGVFSNNKSKKYFEQTLNELNFNLNYVNKG 66



 Score = 23.4 bits (48), Expect = 2.9
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +1

Query: 343 RFKTSSTTMKNKVDIKVQ 396
           RF+T+S  +++ V+IKVQ
Sbjct: 186 RFQTTSQNLEDDVEIKVQ 203


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = +3

Query: 570 KKLLQSGSMSFPSNRAKEYRE 632
           +++L +G++ FP  RA++YR+
Sbjct: 52  RQVLPNGNLVFPPFRAEDYRQ 72


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 606 SNRAKEYRENACINGAKIKRSNNNFFASGNDADSSGN 716
           SN +     NA  N +    +NNN   + N A+ +GN
Sbjct: 223 SNNSTITAGNANTNASNNNNNNNNNNNNNNGANDNGN 259


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 834 HHRSWLENQSDLILFSHLV 778
           HHR WL+    L+   HL+
Sbjct: 2   HHRMWLQQIFILLQMIHLI 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,107
Number of Sequences: 438
Number of extensions: 5522
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)