Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_I16
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    27   2.9  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    26   5.1  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    25   8.9  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    25   8.9  

>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +2

Query: 152 KSVCIVNEYSDFFHLCW*I-ITLSFRNVYGKL*YKYTYKSYNLFYYSYFI 298
           KS CI  +  DF   CW    T    +VY  L    +  S N+ Y  Y++
Sbjct: 60  KSFCIRIQCRDFMFFCWRFQSTEDAMDVYDTLQELMSINSINMLYAFYYM 109


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = +3

Query: 42  NQIPLFQHPXMQLISSQIVLNXLVHHCGFLFYDKIF 149
           N++PL  HP   +    +  N +  H     YD  F
Sbjct: 443 NRLPLVNHPIRSIFKHNVSENPITDHSEHAVYDSEF 478


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 379 SLKKFNWKVKHTQERNLIL 323
           +LK+F WKV HT ++   L
Sbjct: 438 ALKRFPWKVPHTSDKRFNL 456


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 566 FVSVANKPSRARTEEITKIWQTSLWSNHIQA 474
           ++S+  KP+ A  E I  +WQ  L++   +A
Sbjct: 417 YISIVQKPNIAFPEIILFLWQAILYNKRFRA 447


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,710,608
Number of Sequences: 5004
Number of extensions: 51874
Number of successful extensions: 110
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)