Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_I16
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    26   0.44 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.3  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.1  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    23   4.1  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    23   4.1  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +2

Query: 206 IITLSFRNVYGKL*YKYTYKSYN--LFYYSYFI 298
           I +LS    Y    YKY Y +YN  L+Y +Y I
Sbjct: 315 ISSLSNNYNYNNNNYKYNYNNYNKKLYYKNYII 347


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 347 YPGKKPDIKNKALRDEL*NNYNKI 276
           +PG   + + K L D+L +NYN++
Sbjct: 12  FPGASANSEAKRLYDDLLSNYNRL 35


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 569 MFVSVANKPSRARTEEITKIW 507
           M VSV +KPS    +  T++W
Sbjct: 402 MTVSVTSKPSTMERQTQTEVW 422


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 80  HQLSNCPQXAXPSLWFFI 133
           + L+ C Q + P +WF I
Sbjct: 127 YNLAKCVQESAPDVWFVI 144


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 80  HQLSNCPQXAXPSLWFFI 133
           + L+ C Q + P +WF I
Sbjct: 127 YNLAKCVQESAPDVWFVI 144


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,879
Number of Sequences: 438
Number of extensions: 3580
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)