Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_I04
(789 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe... 31 0.14
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa... 30 0.43
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 27 2.3
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 27 3.1
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 26 5.4
SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3 |Schizosac... 26 7.1
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 25 9.4
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom... 25 9.4
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi... 25 9.4
>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 537
Score = 31.5 bits (68), Expect = 0.14
Identities = 21/74 (28%), Positives = 33/74 (44%)
Frame = -3
Query: 583 KDSMYLCTIKNVENKQ*YWGVIHNKELLYGLEIVNSNIHSVKNVSTRNHLQYRYAINICG 404
KD M K V+ + W +H+ L L I+N + +VK Y Y IN+ G
Sbjct: 347 KDGMAPKIFKRVDKRGVPWVAVHSVHLFGFLSIMNYSTGAVK--------AYGYIINLAG 398
Query: 403 TSRLLIASKLQFFH 362
S ++ + + F H
Sbjct: 399 VSAFIVWTAIIFVH 412
>SPBC530.15c ||SPBC661.01|spermidine family transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 516
Score = 29.9 bits (64), Expect = 0.43
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -2
Query: 509 RTALWPRNSKFKYTFS*KCINAQPPSIPIRYQYLWHQPTSYCFKTPIFPPVLAPV 345
RT R SK + C++A+ P+ + Y +H+ ++ + IF P+L V
Sbjct: 257 RTITEIRASKVRVLTGNYCLHAKSEEEPLEFSYFFHKYFTFPLRLLIFEPILLVV 311
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 27.5 bits (58), Expect = 2.3
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Frame = +1
Query: 58 FLDIAVIFKKTIDTYVITFQLCI-KCTIK--LIDCFLYSHRDSLRKTFPNFLSTKK*QSC 228
+L+ A+ + D YV F + K +I+ + C + SH D+L K F+ + SC
Sbjct: 231 YLEYAMSSLEREDAYVEKFDIVRDKKSIRETVQRCLITSHLDTLTKGISQFIEKRDAHSC 290
Query: 229 QVSQYALS*TIHFRKQIIQ 285
++ YAL H + +IQ
Sbjct: 291 KL-LYALLQFNHETEYLIQ 308
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -1
Query: 393 FLLLQNSNFSTCFGTCFHLVEDIVENSQKRLKML*VLDYLF 271
F L+ SNF F + F L+ + S + LK +LD+LF
Sbjct: 285 FGLIGLSNFVNSFSSFFELISHFLIKSAQNLKGDSLLDFLF 325
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 424 YAINICGTSRLLIASKLQFFHLFWHLF 344
Y INIC ++ S FFH FW++F
Sbjct: 1311 YTINIC--VKVYGLSFYYFFHSFWNMF 1335
>SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 328
Score = 25.8 bits (54), Expect = 7.1
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = +1
Query: 61 LDIAVIFKKTIDTYVITFQLCIKCTIKLIDCFLYSH-----RDSLRKTFPNFLSTKK*QS 225
L++ F++ +T I FQL ++ ++ C SH +D ++K FP S QS
Sbjct: 73 LELQSQFEERNETDAINFQLLVRNVVRYAICSQTSHNTITRKDIVQKAFPEGTSRNLFQS 132
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 177 FKKNLSKLFIHQKVTKLPGFSVCSFINHTLSQTNNPILITF 299
F K+ KLFI+ T S HT+S NP +I+F
Sbjct: 252 FDKDQKKLFINDVSTTKYDLLTFSGAIHTVSSLINPEIISF 292
>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 697 FQLKKVSSRKATFIPIKYKYLWH 629
F++ K +K + PI Y YLWH
Sbjct: 546 FRISK--KKKPSICPIAYTYLWH 566
>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 93 RYLCDYISIMYKMHYQAD*LLFIFS*RFF 179
+Y+ YI+++ M+Y +LF+F FF
Sbjct: 215 QYIVAYIAMLLAMYYNGYVILFLFCGTFF 243
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,236,229
Number of Sequences: 5004
Number of extensions: 71731
Number of successful extensions: 198
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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