Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_I04
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    24   1.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.2  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   5.7  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +3

Query: 339 NENRCQNRWKNWSFEAIRSRLVPQ 410
           +E RC  +W +W+++  +  L  Q
Sbjct: 141 DEQRCVLKWASWTYDGYQLELEKQ 164


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -3

Query: 268  ESVWFMKEHTEKPGNFVTFWWIKSLERFFLKNLYENIKSNQ 146
            E +W + + TEK  + + + W    ER+   ++Y N++  Q
Sbjct: 1090 EEMWELID-TEKLTDRLPYPWTMDNERYVKVDMYMNLEGEQ 1129


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 447 RATTFNTDTLSIFVAPADFLLLQNSNFST 361
           RAT    D +S F  P  FL+L    +ST
Sbjct: 353 RATAIYIDKVSRFFFPFSFLILNVVYWST 381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,576
Number of Sequences: 438
Number of extensions: 4641
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)