Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_I03
(319 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce... 28 0.39
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 26 1.2
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re... 25 2.1
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 25 2.8
SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces po... 24 4.8
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 24 6.4
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 24 6.4
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 24 6.4
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 23 8.5
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p... 23 8.5
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo... 23 8.5
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 23 8.5
>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 27.9 bits (59), Expect = 0.39
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 208 WLLARSKFLIPNILF*YNYSSKCSLKFFY 294
W+LAR KF N YNYS+K + F+
Sbjct: 408 WMLARPKFSQINTSHLYNYSTKQMISKFW 436
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 26.2 bits (55), Expect = 1.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 97 PTTIRLARKIISPLETLFLGGVQITLMFLCWATFLKI 207
P TI L RK+ S L+ + ++ L F CW L +
Sbjct: 73 PFTI-LCRKLASTLKQRVIFFTRVLLTFFCWTVLLPL 108
>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
related|Schizosaccharomyces pombe|chr 2|||Manual
Length = 773
Score = 25.4 bits (53), Expect = 2.1
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 174 HVPLLGDILKDLVVSAK*IPNSKHF 248
HVP+ DI +V K N KHF
Sbjct: 382 HVPVFNDIYLTKIVKNKATANKKHF 406
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1115
Score = 25.0 bits (52), Expect = 2.8
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = -1
Query: 238 ELGIYFALTTKSLRMSPNKGT 176
E G+ F+L++KSLR+S KGT
Sbjct: 70 ERGV-FSLSSKSLRLSNRKGT 89
>SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 167
Score = 24.2 bits (50), Expect = 4.8
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -3
Query: 128 MIFLASLMVVGWSAIPAWVLVNIKHYRDKQIKLS 27
+ FLAS ++ WS++ V + +++ IK+S
Sbjct: 72 LYFLASCLLTFWSSVVKGSTVYVATKKERHIKIS 105
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 23.8 bits (49), Expect = 6.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 153 WRSADNAHVPLLGDILKDLVVS 218
WRSAD+ H+P + L V+S
Sbjct: 1114 WRSADDLHLPYITRALLTNVLS 1135
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 23.8 bits (49), Expect = 6.4
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +3
Query: 81 WDGRPAHHHQAGEEDHLTSGNLVSWRSADN-AHVPL 185
WDG A + D+ GN+ + R+ +N H P+
Sbjct: 226 WDGENAESDSSLNGDNTRGGNISTNRAFNNMGHAPI 261
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 23.8 bits (49), Expect = 6.4
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = -2
Query: 198 ECRPT-KEHERYLHSAKKQGFQR 133
+CR H RYL SAKK G R
Sbjct: 20 QCRNKYHSHVRYLSSAKKSGILR 42
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 23.4 bits (48), Expect = 8.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 4 RIDYIFFCDNFICLSR*CLML 66
RI + FCD ++CL R L +
Sbjct: 684 RIFDMLFCDGYVCLFRVALTI 704
>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 23.4 bits (48), Expect = 8.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 192 RPTKEHERYLHSAKKQGFQR*DDLPRQPDG 103
RPT+ ER+ + +GF D+ R DG
Sbjct: 243 RPTRRRERHYRTRDDEGF---DEFGRSRDG 269
>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 23.4 bits (48), Expect = 8.5
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = -3
Query: 179 NMSVICTPPRNKVSRGEMIFLASLMVVGWSAIPAWVLVNIKHYRDKQIKLSQK 21
++++ C N G ++F + V G A W L I H R + +QK
Sbjct: 397 SLAMACIAYVNAAPDGSVVFDWLMSVSGGGAFVIWGLSFIDHIRLRYAMKAQK 449
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 23.4 bits (48), Expect = 8.5
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 261 LFFEV*SQIFLCKIDNQFI 317
LFFE QI L +D QF+
Sbjct: 782 LFFEFPKQISLASVDKQFM 800
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,343,673
Number of Sequences: 5004
Number of extensions: 24685
Number of successful extensions: 56
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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