Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_H23
         (833 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    48   2e-06
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    45   2e-05
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    41   2e-04
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    35   0.012
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    34   0.022
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    32   0.12 
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    27   3.3  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    27   3.3  
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    27   3.3  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    27   4.3  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    27   4.3  

>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = -1

Query: 782 CGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXI-ASEYNINSMPTFVFVKXGKKLDEF 606
           CGPCK I P   ++A++                   AS   + +MPTFVF + GK++D  
Sbjct: 31  CGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQIDML 90

Query: 605 SGANVDXLKTTI 570
           +GAN   LK  +
Sbjct: 91  TGANPQALKEKV 102


>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 23/71 (32%), Positives = 36/71 (50%)
 Frame = -1

Query: 782 CGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKXGKKLDEFS 603
           CGPCK I PK ++ +                   IA+E  +++MP+F   K G+K++E  
Sbjct: 30  CGPCKAIAPKFEQFS-NTYSDATFIKVDVDQLSEIAAEAGVHAMPSFFLYKNGEKIEEIV 88

Query: 602 GANVDXLKTTI 570
           GAN   L+ +I
Sbjct: 89  GANPAKLEASI 99


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 21/75 (28%), Positives = 38/75 (50%)
 Frame = -1

Query: 782 CGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKXGKKLDEFS 603
           CGPCK + P L+++ +E                 IA +  + ++PT V  + G++LD   
Sbjct: 47  CGPCKYLKPFLEKL-SEQNQKASFIAVNADKFSDIAQKNGVYALPTMVLFRKGQELDRIV 105

Query: 602 GANVDXLKTTILKHK 558
           GA+V  L + + K++
Sbjct: 106 GADVKTLSSLLAKYQ 120


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 35.1 bits (77), Expect = 0.012
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = -1

Query: 782 CGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXI-ASEYNINSMPTFVFVKXGKKLDEF 606
           CG CK + P+ +  A E+                   SEY+I   PT    K GK++ ++
Sbjct: 51  CGHCKALAPEYESAADELEKDGISLVEVDCTEEGDLCSEYSIRGYPTLNVFKNGKQISQY 110

Query: 605 SG 600
           SG
Sbjct: 111 SG 112


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 34.3 bits (75), Expect = 0.022
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = -1

Query: 776 PCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKXGKKLDEFSGA 597
           PCK +    D+ A +                  A  +++N++P FV +   K L   SGA
Sbjct: 34  PCKQMNQVFDQFAKDTKNAVFLKIEAEKFSDI-AESFDVNAVPLFVLIHGAKVLARISGA 92

Query: 596 NVDXLKTTI 570
           N   LK  I
Sbjct: 93  NPQKLKAAI 101


>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +1

Query: 424 KLISSNSLQTLKTFFIYIL-KTYTCFFFKFHLSFHRRLRTTLVSIYLCLRIVVL 582
           +L++ +S   +  + +Y+L KTYT +FF    SF R ++  L+    C   + L
Sbjct: 12  ELLNDSSSNMIWLYEVYMLYKTYTSYFFMSSKSFVRGVKRYLIYFCYCANFIAL 65


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
 Frame = -1

Query: 782 CGPCKMIGPKLDEIAA--EMXXXXXXXXXXXXXXXXIASEYNINSMPTFV-FVKXGKKLD 612
           CG CK + P  +E+ A  E                 +A +Y+I   PT + F   G +  
Sbjct: 51  CGHCKSLAPVYEELGALFEDHNDVLIGKIDADTHSDVADKYHITGFPTLIWFPPDGSEPV 110

Query: 611 EFSGA-NVDXL 582
           ++S A +VD L
Sbjct: 111 QYSNARDVDSL 121


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 391 IFCIPEAANTKKLISSNSLQTLKTFFIYIL 480
           ++C+P +    +LI SNS Q   +F+ Y L
Sbjct: 308 LYCLPPSNVMYELIKSNSQQPFVSFYAYAL 337


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -1

Query: 470 IKNVFNVCNEFEDINFFVFAASGMQKILVLL*SNXSINK 354
           +KN  +   EFE I F+ + AS +Q+I  L+ S  ++ +
Sbjct: 397 LKNKVHTIKEFEKIVFYFYEASDLQQIRSLVSSLITVEE 435


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +1

Query: 397 CIPEAANTK--KLISSNSLQTLKTFFIYILKTY 489
           CI     TK  KL+SSN+LQ +  F+  ++K +
Sbjct: 401 CISSTFITKAFKLVSSNTLQAMSHFYATMIKLF 433


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
 Frame = -1

Query: 782 CGPCKMIGPKLD---EIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKXGKKLD 612
           CG CK +GP  D   E A E                 ++S  NI ++PT    + G+ ++
Sbjct: 54  CGACKRLGPMWDNMVEKAKEQVEGSNFHFGEVDCSKELSSCANIRAVPTLYLYQNGEIVE 113

Query: 611 E 609
           E
Sbjct: 114 E 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,642,238
Number of Sequences: 5004
Number of extensions: 44166
Number of successful extensions: 105
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)