Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_H23
         (833 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106589-2|AAC78230.1|  107|Caenorhabditis elegans Hypothetical ...    61   8e-10
Z81552-7|CAB04487.2|  606|Caenorhabditis elegans Hypothetical pr...    50   2e-06
AL117201-5|CAB57916.1|  606|Caenorhabditis elegans Hypothetical ...    50   2e-06
U23168-7|AAC38808.1|  115|Caenorhabditis elegans Hypothetical pr...    48   1e-05
U23168-6|AAP86623.1|  114|Caenorhabditis elegans Hypothetical pr...    48   1e-05
DQ241300-1|ABB45864.1|  114|Caenorhabditis elegans TRX-1b protein.     48   1e-05
DQ241299-1|ABB45863.1|  115|Caenorhabditis elegans TRX-1a protein.     48   1e-05
AF143900-1|AAF66677.1|  284|Caenorhabditis elegans thioredoxin-l...    47   1e-05
AF143405-1|AAF66636.1|  284|Caenorhabditis elegans thioredoxin-l...    47   1e-05
AC024810-17|AAF60759.1|  284|Caenorhabditis elegans Hypothetical...    47   1e-05
Z71178-7|CAA94881.1|  119|Caenorhabditis elegans Hypothetical pr...    41   0.001
AC024827-2|AAF60805.2|  254|Caenorhabditis elegans Hypothetical ...    40   0.002
AF250925-1|AAF74721.1|  542|Caenorhabditis elegans PNGase protein.     37   0.015
AF125951-5|AAL27238.1|  345|Caenorhabditis elegans Hypothetical ...    31   1.0  
AF125951-4|AAT68898.1|  342|Caenorhabditis elegans Hypothetical ...    31   1.0  
Z54218-1|CAA90954.1|  315|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ...    28   9.5  
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ...    28   9.5  

>AF106589-2|AAC78230.1|  107|Caenorhabditis elegans Hypothetical
           protein Y44E3A.3 protein.
          Length = 107

 Score = 61.3 bits (142), Expect = 8e-10
 Identities = 28/63 (44%), Positives = 37/63 (58%)
 Frame = -1

Query: 782 CGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKXGKKLDEFS 603
           CGPC+MI P+++E+AAE                 +  EY INSMPTF+ +  G K D+FS
Sbjct: 32  CGPCQMIKPRVEELAAEHKDRLSILKIDVDECDGVGEEYEINSMPTFLLIVDGIKKDQFS 91

Query: 602 GAN 594
           GAN
Sbjct: 92  GAN 94


>Z81552-7|CAB04487.2|  606|Caenorhabditis elegans Hypothetical
           protein F56G4.5 protein.
          Length = 606

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 24/74 (32%), Positives = 37/74 (50%)
 Frame = -1

Query: 782 CGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKXGKKLDEFS 603
           CGPC+MI P  ++ +AE                     YNI++MPTF+F+K  +++D   
Sbjct: 34  CGPCRMISPIFEQFSAEYGNATFLKVNCDVARDI-VQRYNISAMPTFIFLKNRQQVDMVR 92

Query: 602 GANVDXLKTTILKH 561
           GAN   +   I +H
Sbjct: 93  GANQQAIAEKIRQH 106


>AL117201-5|CAB57916.1|  606|Caenorhabditis elegans Hypothetical
           protein F56G4.5 protein.
          Length = 606

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 24/74 (32%), Positives = 37/74 (50%)
 Frame = -1

Query: 782 CGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKXGKKLDEFS 603
           CGPC+MI P  ++ +AE                     YNI++MPTF+F+K  +++D   
Sbjct: 34  CGPCRMISPIFEQFSAEYGNATFLKVNCDVARDI-VQRYNISAMPTFIFLKNRQQVDMVR 92

Query: 602 GANVDXLKTTILKH 561
           GAN   +   I +H
Sbjct: 93  GANQQAIAEKIRQH 106


>U23168-7|AAC38808.1|  115|Caenorhabditis elegans Hypothetical
           protein B0228.5a protein.
          Length = 115

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = -1

Query: 782 CGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKXGKKLDEFS 603
           CGPCK I P   E+A                   + S+Y++  MPTF+F K G  ++   
Sbjct: 39  CGPCKAIAPLYKELATT-HKGIIFCKVDVDEAEDLCSKYDVKMMPTFIFTKNGDAIEALE 97

Query: 602 GANVDXLKTTILKH 561
           G   D L+  +L+H
Sbjct: 98  GCVEDELRQKVLEH 111


>U23168-6|AAP86623.1|  114|Caenorhabditis elegans Hypothetical
           protein B0228.5b protein.
          Length = 114

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = -1

Query: 782 CGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKXGKKLDEFS 603
           CGPCK I P   E+A                   + S+Y++  MPTF+F K G  ++   
Sbjct: 38  CGPCKAIAPLYKELATT-HKGIIFCKVDVDEAEDLCSKYDVKMMPTFIFTKNGDAIEALE 96

Query: 602 GANVDXLKTTILKH 561
           G   D L+  +L+H
Sbjct: 97  GCVEDELRQKVLEH 110


>DQ241300-1|ABB45864.1|  114|Caenorhabditis elegans TRX-1b protein.
          Length = 114

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = -1

Query: 782 CGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKXGKKLDEFS 603
           CGPCK I P   E+A                   + S+Y++  MPTF+F K G  ++   
Sbjct: 38  CGPCKAIAPLYKELATT-HKGIIFCKVDVDEAEDLCSKYDVKMMPTFIFTKNGDAIEALE 96

Query: 602 GANVDXLKTTILKH 561
           G   D L+  +L+H
Sbjct: 97  GCVEDELRQKVLEH 110


>DQ241299-1|ABB45863.1|  115|Caenorhabditis elegans TRX-1a protein.
          Length = 115

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = -1

Query: 782 CGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKXGKKLDEFS 603
           CGPCK I P   E+A                   + S+Y++  MPTF+F K G  ++   
Sbjct: 39  CGPCKAIAPLYKELATT-HKGIIFCKVDVDEAEDLCSKYDVKMMPTFIFTKNGDAIEALE 97

Query: 602 GANVDXLKTTILKH 561
           G   D L+  +L+H
Sbjct: 98  GCVEDELRQKVLEH 111


>AF143900-1|AAF66677.1|  284|Caenorhabditis elegans thioredoxin-like
           protein protein.
          Length = 284

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 22/74 (29%), Positives = 38/74 (51%)
 Frame = -1

Query: 782 CGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKXGKKLDEFS 603
           CGPCKMI P  + ++ +                  +SE  +NSMPTF+  + G ++++  
Sbjct: 33  CGPCKMIAPTFEALSNQYLGAVFLKVDVEICEKT-SSENGVNSMPTFMVFQSGVRVEQMK 91

Query: 602 GANVDXLKTTILKH 561
           GA+   L+T + K+
Sbjct: 92  GADAKALETMVKKY 105


>AF143405-1|AAF66636.1|  284|Caenorhabditis elegans thioredoxin-like
           protein TXL protein.
          Length = 284

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 22/74 (29%), Positives = 38/74 (51%)
 Frame = -1

Query: 782 CGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKXGKKLDEFS 603
           CGPCKMI P  + ++ +                  +SE  +NSMPTF+  + G ++++  
Sbjct: 33  CGPCKMIAPTFEALSNQYLGAVFLKVDVEICEKT-SSENGVNSMPTFMVFQSGVRVEQMK 91

Query: 602 GANVDXLKTTILKH 561
           GA+   L+T + K+
Sbjct: 92  GADAKALETMVKKY 105


>AC024810-17|AAF60759.1|  284|Caenorhabditis elegans Hypothetical
           protein Y54E10A.3 protein.
          Length = 284

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 22/74 (29%), Positives = 38/74 (51%)
 Frame = -1

Query: 782 CGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKXGKKLDEFS 603
           CGPCKMI P  + ++ +                  +SE  +NSMPTF+  + G ++++  
Sbjct: 33  CGPCKMIAPTFEALSNQYLGAVFLKVDVEICEKT-SSENGVNSMPTFMVFQSGVRVEQMK 91

Query: 602 GANVDXLKTTILKH 561
           GA+   L+T + K+
Sbjct: 92  GADAKALETMVKKY 105


>Z71178-7|CAA94881.1|  119|Caenorhabditis elegans Hypothetical
           protein B0024.9 protein.
          Length = 119

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = -1

Query: 782 CGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKXGKKLDEFS 603
           CGPC+ +GP+L+E                     +A +Y I+++PT    K G+K+  FS
Sbjct: 42  CGPCQALGPRLEEKVNGRQGSVLLAKINVDHAGELAMDYGISAVPTVFAFKNGEKISGFS 101

Query: 602 G 600
           G
Sbjct: 102 G 102


>AC024827-2|AAF60805.2|  254|Caenorhabditis elegans Hypothetical
           protein Y55F3AR.2 protein.
          Length = 254

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 20/74 (27%), Positives = 34/74 (45%)
 Frame = -1

Query: 782 CGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKXGKKLDEFS 603
           CGPC+ I P   ++A +                  A+ Y +N+MPTF+    G+K     
Sbjct: 33  CGPCQYIAPIFSDLANQYKGSVFLKVDVDECRGTAAT-YGVNAMPTFIAFVNGQKKATIQ 91

Query: 602 GANVDXLKTTILKH 561
           GA+   L++ + K+
Sbjct: 92  GADESGLRSMVAKY 105


>AF250925-1|AAF74721.1|  542|Caenorhabditis elegans PNGase protein.
          Length = 542

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = -1

Query: 668 YNINSMPTFVFVKXGKKLDEFSGANVDXLKTTILKH 561
           YNI++MPTF+F+K  +++D   GAN   +   I +H
Sbjct: 7   YNISAMPTFIFLKNRQQVDMVRGANQQAIAEKIRQH 42


>AF125951-5|AAL27238.1|  345|Caenorhabditis elegans Hypothetical
           protein D2063.3a protein.
          Length = 345

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = -1

Query: 773 CKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKXGKKLDEFSG 600
           C+ +   LD++ AE+                I+  + I + PT VF   GK++D   G
Sbjct: 34  CEQVNQLLDDLLAEIALPLRAAFIDAEALPGISLNFKITAAPTLVFFSNGKEVDRIDG 91


>AF125951-4|AAT68898.1|  342|Caenorhabditis elegans Hypothetical
           protein D2063.3b protein.
          Length = 342

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = -1

Query: 773 CKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKXGKKLDEFSG 600
           C+ +   LD++ AE+                I+  + I + PT VF   GK++D   G
Sbjct: 34  CEQVNQLLDDLLAEIALPLRAAFIDAEALPGISLNFKITAAPTLVFFSNGKEVDRIDG 91


>Z54218-1|CAA90954.1|  315|Caenorhabditis elegans Hypothetical
           protein F37B12.1 protein.
          Length = 315

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +1

Query: 397 CIPEAANTKKLISSNSLQTLKTFFIYILKTYTCFFF 504
           C        KL  + S  ++K   +Y L  YTC FF
Sbjct: 207 CTSTVTTAPKLTKAKSCDSIKRTRLYFLVVYTCRFF 242


>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein
           363, isoform b protein.
          Length = 2692

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +1

Query: 409 AANTKKLISSNSLQTLKTFFIYILKTYTCFFFKFHLSFHRRLRTTLVSIYLCLRIVVLSX 588
           A + +K IS  S    KT    +L  Y  F F F  ++H ++ T + +I   L  + LS 
Sbjct: 455 ATHIEKTISFISAAIKKTTNSDVLDNYFTFLFLFVDAYHEQVTTQIKAIIPQLMDITLSR 514

Query: 589 S 591
           S
Sbjct: 515 S 515


>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein
           363, isoform a protein.
          Length = 2695

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +1

Query: 409 AANTKKLISSNSLQTLKTFFIYILKTYTCFFFKFHLSFHRRLRTTLVSIYLCLRIVVLSX 588
           A + +K IS  S    KT    +L  Y  F F F  ++H ++ T + +I   L  + LS 
Sbjct: 455 ATHIEKTISFISAAIKKTTNSDVLDNYFTFLFLFVDAYHEQVTTQIKAIIPQLMDITLSR 514

Query: 589 S 591
           S
Sbjct: 515 S 515


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,706,575
Number of Sequences: 27780
Number of extensions: 251499
Number of successful extensions: 569
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)