Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_H21
         (367 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0057 + 476172-476283,476337-476449,476532-476634,477089-47...    29   1.1  
07_03_1626 + 28223967-28225294,28225506-28225779,28225939-282262...    27   6.0  
02_05_1303 + 35572403-35572624,35572744-35572860,35572987-355731...    26   7.9  

>03_01_0057 +
           476172-476283,476337-476449,476532-476634,477089-477210,
           477303-477497,477627-477701,478082-478179,478328-478421
          Length = 303

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 174 TMKPWRLFINLFRMKLKNSCYARSLKPTPPKRKHRQN 64
           TMK W++FI  F +   + C+ + +K +     H +N
Sbjct: 250 TMKHWQVFILFFELFTASVCFGKRIKHSSISEGHDEN 286


>07_03_1626 +
           28223967-28225294,28225506-28225779,28225939-28226230,
           28226492-28226651,28226809-28226917,28227004-28227099
          Length = 752

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = -2

Query: 201 PSPALCPAGTMKPWRLFINLFRMKLKNSCY----ARSLKPTPPKR 79
           P+ A+  A    P+RLF    R   K S      AR LKP+PP R
Sbjct: 3   PAVAVVAAAAAFPFRLFSAEARRNTKGSRSKRGSARPLKPSPPPR 47


>02_05_1303 +
           35572403-35572624,35572744-35572860,35572987-35573112,
           35573217-35573279,35573837-35573944,35574587-35574664,
           35574772-35574864,35575206-35575292,35575429-35575530,
           35575617-35575736,35575839-35575901,35575974-35576119,
           35576203-35576296,35576399-35576457,35576568-35576607,
           35576694-35576785,35576877-35576946,35578172-35578333,
           35578477-35578703,35578863-35579070,35579173-35579258,
           35579450-35579541,35579674-35579870
          Length = 883

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 294 TNSRFYSLFWLAS*WPKPNSLSHP 223
           T+SR   LFW AS W K     HP
Sbjct: 846 TSSRSSDLFWAASSWLKQLRAYHP 869


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,434,931
Number of Sequences: 37544
Number of extensions: 218197
Number of successful extensions: 615
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)