Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_H17
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr...   189   5e-49
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    30   0.49 
SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces...    29   0.85 
SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    28   1.5  
SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr...    27   3.4  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    27   4.5  

>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 652

 Score =  189 bits (460), Expect = 5e-49
 Identities = 93/244 (38%), Positives = 146/244 (59%)
 Frame = -3

Query: 863  LPAPKQIEVVEAIANKAAIGKAFXKDSQAINDTLXTLDNAALEEMQKELDSNGEYTLITA 684
            LP P  +E  E   N+   G  F +D++A+ + + +   +   E   +L + G+  +   
Sbjct: 409  LPEPVVVEQFEVEVNRKKFGPRFKRDAKAVEEAMISWPESEKVEKSAQLVAEGKIIVNVN 468

Query: 683  RGEFKLTPSLVNVKKTQKTIHVEEIIPSVIEPSFGVGRILYCILEHNFRMREGDEQRTYF 504
              E  +   LV ++K + T H+    P+VIEPSFG+GRILY ++EH +  R  D  R   
Sbjct: 469  GVEHTVESDLVTIEKRKHTEHIRTYTPNVIEPSFGLGRILYVLMEHAYWTRPEDVNRGVL 528

Query: 503  SLPPTVAPMKCVVLPLSGNAEFQPFVRDLSQELITVDVSHKVDDSSGSIGRRYARTDELG 324
            S P ++AP+K +++PLS NAEF PFV+ LS +L  + +S+K+DDS+ +IGRRYAR DELG
Sbjct: 529  SFPASIAPIKALIVPLSRNAEFAPFVKKLSAKLRNLGISNKIDDSNANIGRRYARNDELG 588

Query: 323  VPYAVTVDFDTIKEPHTVTLRERDSMRQVRLPMADVPTVVRDLSNSKILWSDVEQKYPKF 144
             P+ +TVDF+T++   T+TLRERDS +QVR    +V   +  +   K  + D   K+ +F
Sbjct: 589  TPFGLTVDFETLQN-ETITLRERDSTKQVRGSQDEVIAALVSMVEGKSSFEDALAKFGEF 647

Query: 143  EQQE 132
            +  +
Sbjct: 648  KSTQ 651


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
 Frame = -3

Query: 755 LDNAALEEMQKELDSNGEYTLITARGEF-KLTPSLVNVKKTQKTIHVEEI-----IPSVI 594
           +D   LEE+QKE + +G       RG+F  L    +  K T  T+H +EI     IP++ 
Sbjct: 571 IDPEKLEEIQKEAEDSGALMEEELRGKFINLRCKYLFSKLT--TLHEKEIDTLLTIPNIW 628

Query: 593 E-PSFGVGRILYC-ILEHNFRMREGDEQRTY 507
           + P +  G I+YC  LE  +   E +  R Y
Sbjct: 629 DIPEYSRG-IIYCRWLESAYAAAEKELNRLY 658


>SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 181 ILLLDKSLTTVGTSAMGNLTCLILSLSLRVTVWGSLIVSKST 306
           +L ++KSLT  GT+   NL+C  L + +   +  +L+ S  +
Sbjct: 213 LLQINKSLTIDGTNISANLSCTHLVIQIPKVIQATLVCSSES 254


>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 425

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -3

Query: 497 PPTVAPMKCVVLPLSGN-AEFQPFVRDLSQELITVDVSHKVDDSSGSIGRRYARTDELGV 321
           P ++AP K +V+P S N  +    V D +  ++  D     D  + + G +    + +G 
Sbjct: 323 PSSIAPWKVLVVPTSDNHIQSAETVYDATANVVGFDNVLLEDRQNRAFGYKMRDAELIGY 382

Query: 320 PYAVTV 303
           P+ + V
Sbjct: 383 PFVIVV 388


>SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 680 GEFKLTPSLVNVKKTQKTIHVEEIIPSVIEP 588
           G+F L P+ VNV       ++ EI+P +  P
Sbjct: 98  GKFPLHPNNVNVNSEILEYYINEIVPKISSP 128


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -3

Query: 488 VAPMKCVVLPLSGNAEFQPFVRDLSQE 408
           + P+    +P++   EFQP++ ++SQE
Sbjct: 59  ITPVTLSPIPITPVREFQPYLHEISQE 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,455,662
Number of Sequences: 5004
Number of extensions: 71553
Number of successful extensions: 182
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)