Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_H17
(865 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23412-2|AAN65294.1| 678|Caenorhabditis elegans Glycyl trna syn... 254 5e-68
U23412-1|AAK21465.2| 742|Caenorhabditis elegans Glycyl trna syn... 254 5e-68
U21308-13|ABB88221.1| 532|Caenorhabditis elegans Tryptophan hyd... 31 0.80
AF135186-1|AAD30115.1| 532|Caenorhabditis elegans tryptophan hy... 31 0.80
U39999-8|AAY44011.1| 146|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z75531-3|CAA99799.1| 172|Caenorhabditis elegans Hypothetical pr... 30 2.4
U50313-3|AAA92327.1| 335|Caenorhabditis elegans Cysteine protea... 29 4.3
L39926-1|AAA98783.1| 335|Caenorhabditis elegans cathepsin B-lik... 29 4.3
L39895-1|AAA98785.1| 335|Caenorhabditis elegans cathepsin B-lik... 29 4.3
L14714-1|AAA28180.2| 244|Caenorhabditis elegans Temporarily ass... 29 4.3
Z50070-6|CAA90395.1| 548|Caenorhabditis elegans Hypothetical pr... 29 5.7
AL032628-3|CAA21554.2| 164|Caenorhabditis elegans Hypothetical ... 29 5.7
AL032658-4|CAA21746.1| 283|Caenorhabditis elegans Hypothetical ... 28 7.5
Z74035-3|CAA98481.1| 808|Caenorhabditis elegans Hypothetical pr... 28 9.9
>U23412-2|AAN65294.1| 678|Caenorhabditis elegans Glycyl trna
synthetase protein1, isoform b protein.
Length = 678
Score = 254 bits (623), Expect = 5e-68
Identities = 119/246 (48%), Positives = 169/246 (68%), Gaps = 1/246 (0%)
Frame = -3
Query: 863 LPAPKQIEVVEAIANKAAIGKAFXKDSQAINDTLXTLDNAALEEMQKELDSNGEYTLITA 684
LP P + VEA AN A +GK+F KD++ I +L L + + +++EL + Y L
Sbjct: 432 LPEPVDVNFVEAQANMALLGKSFKKDAKKIQTSLQQLTSEQVSALEEELLAKKLYNLSVD 491
Query: 683 RGEFKLTPSLVNVKKTQKTIHVEEIIPSVIEPSFGVGRILYCILEHNFRMREGDEQRTYF 504
+ LTP +N+KK K IHV+EI PSVIEPS+G+GRI+Y +LEH+FR REGDEQRT+
Sbjct: 492 GQNYALTPEHLNIKKYTKKIHVQEITPSVIEPSYGIGRIMYALLEHSFRQREGDEQRTFL 551
Query: 503 SLPPTVAPMKCVVLPLSGNAEFQPFVRDLSQELITVDVSHKVDDSSGSIGRRYARTDELG 324
+ P VAP+KC VLP+S N P + + +EL ++S+KVDDSSG+IGRRYARTDE+G
Sbjct: 552 AFKPLVAPIKCSVLPISANDTLIPVMDAVKEELSRFEMSYKVDDSSGTIGRRYARTDEIG 611
Query: 323 VPYAVTVDFDTIK-EPHTVTLRERDSMRQVRLPMADVPTVVRDLSNSKILWSDVEQKYPK 147
+P+ +TVDFD++K P TVT+R ++M Q+RL ++++ ++ DL + WSD + KYPK
Sbjct: 612 IPFGITVDFDSLKTTPFTVTIRHAETMSQIRLEVSELGRLISDLVAGRQQWSDAQAKYPK 671
Query: 146 FEQQET 129
FE T
Sbjct: 672 FEASAT 677
>U23412-1|AAK21465.2| 742|Caenorhabditis elegans Glycyl trna
synthetase protein1, isoform a protein.
Length = 742
Score = 254 bits (623), Expect = 5e-68
Identities = 119/246 (48%), Positives = 169/246 (68%), Gaps = 1/246 (0%)
Frame = -3
Query: 863 LPAPKQIEVVEAIANKAAIGKAFXKDSQAINDTLXTLDNAALEEMQKELDSNGEYTLITA 684
LP P + VEA AN A +GK+F KD++ I +L L + + +++EL + Y L
Sbjct: 496 LPEPVDVNFVEAQANMALLGKSFKKDAKKIQTSLQQLTSEQVSALEEELLAKKLYNLSVD 555
Query: 683 RGEFKLTPSLVNVKKTQKTIHVEEIIPSVIEPSFGVGRILYCILEHNFRMREGDEQRTYF 504
+ LTP +N+KK K IHV+EI PSVIEPS+G+GRI+Y +LEH+FR REGDEQRT+
Sbjct: 556 GQNYALTPEHLNIKKYTKKIHVQEITPSVIEPSYGIGRIMYALLEHSFRQREGDEQRTFL 615
Query: 503 SLPPTVAPMKCVVLPLSGNAEFQPFVRDLSQELITVDVSHKVDDSSGSIGRRYARTDELG 324
+ P VAP+KC VLP+S N P + + +EL ++S+KVDDSSG+IGRRYARTDE+G
Sbjct: 616 AFKPLVAPIKCSVLPISANDTLIPVMDAVKEELSRFEMSYKVDDSSGTIGRRYARTDEIG 675
Query: 323 VPYAVTVDFDTIK-EPHTVTLRERDSMRQVRLPMADVPTVVRDLSNSKILWSDVEQKYPK 147
+P+ +TVDFD++K P TVT+R ++M Q+RL ++++ ++ DL + WSD + KYPK
Sbjct: 676 IPFGITVDFDSLKTTPFTVTIRHAETMSQIRLEVSELGRLISDLVAGRQQWSDAQAKYPK 735
Query: 146 FEQQET 129
FE T
Sbjct: 736 FEASAT 741
>U21308-13|ABB88221.1| 532|Caenorhabditis elegans Tryptophan
hydroxylase protein1, isoform a protein.
Length = 532
Score = 31.5 bits (68), Expect = 0.80
Identities = 18/68 (26%), Positives = 34/68 (50%)
Frame = -3
Query: 443 EFQPFVRDLSQELITVDVSHKVDDSSGSIGRRYARTDELGVPYAVTVDFDTIKEPHTVTL 264
+FQ + + + + ++ VS D+ RR+ R+ LG+P+ D + P T T+
Sbjct: 12 KFQYYSKKAAGKTMSNSVSMSSDNRMEDFKRRFRRSGSLGIPFVPEEDVKQLFTP-TRTV 70
Query: 263 RERDSMRQ 240
R S+R+
Sbjct: 71 RREASIRE 78
>AF135186-1|AAD30115.1| 532|Caenorhabditis elegans tryptophan
hydroxylase protein.
Length = 532
Score = 31.5 bits (68), Expect = 0.80
Identities = 18/68 (26%), Positives = 34/68 (50%)
Frame = -3
Query: 443 EFQPFVRDLSQELITVDVSHKVDDSSGSIGRRYARTDELGVPYAVTVDFDTIKEPHTVTL 264
+FQ + + + + ++ VS D+ RR+ R+ LG+P+ D + P T T+
Sbjct: 12 KFQYYSKKAAGKTMSNSVSMSSDNRMEDFKRRFRRSGSLGIPFVPEEDVKQLFTP-TRTV 70
Query: 263 RERDSMRQ 240
R S+R+
Sbjct: 71 RREASIRE 78
>U39999-8|AAY44011.1| 146|Caenorhabditis elegans Hypothetical
protein F41G3.19 protein.
Length = 146
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 76 STKAAVQTCVSYTDVPFTVSCCSNLGYFCSTSDHNILLLDKSLTTVGTSAMG 231
ST ++ TCV T+ VS C+ + +C+ S + L+ + T G G
Sbjct: 95 STTSSSSTCVDLTNASTGVSDCTRMASYCTNSIYLTLMKQQCPKTCGYCTSG 146
>Z75531-3|CAA99799.1| 172|Caenorhabditis elegans Hypothetical
protein C54D10.3 protein.
Length = 172
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +1
Query: 76 STKAAVQTCVSYTDVPFTVSCCSNLGYFCSTSDHNILLLDKSLTTVGTSAMGN 234
+T A+ TCV + VS C Y C+ S + L+ ++ T + GN
Sbjct: 65 TTAASTSTCVDKVNPSTGVSDCPKSAYLCNDSTYYTLMTEQCPKTCNRCSGGN 117
>U50313-3|AAA92327.1| 335|Caenorhabditis elegans Cysteine protease
related protein 4 protein.
Length = 335
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 76 STKAAVQTCVSYTDVPFTVSCCSNLGYFC 162
++ AV T +S DV +SCCSN GY C
Sbjct: 125 ASNGAVNTLLSAEDV---LSCCSNCGYGC 150
>L39926-1|AAA98783.1| 335|Caenorhabditis elegans cathepsin B-like
cysteine proteinaseprotein.
Length = 335
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 76 STKAAVQTCVSYTDVPFTVSCCSNLGYFC 162
++ AV T +S DV +SCCSN GY C
Sbjct: 125 ASNGAVNTLLSAEDV---LSCCSNCGYGC 150
>L39895-1|AAA98785.1| 335|Caenorhabditis elegans cathepsin B-like
cysteine proteinaseprotein.
Length = 335
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 76 STKAAVQTCVSYTDVPFTVSCCSNLGYFC 162
++ AV T +S DV +SCCSN GY C
Sbjct: 125 ASNGAVNTLLSAEDV---LSCCSNCGYGC 150
>L14714-1|AAA28180.2| 244|Caenorhabditis elegans Temporarily
assigned gene nameprotein 354, isoform a protein.
Length = 244
Score = 29.1 bits (62), Expect = 4.3
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Frame = -3
Query: 434 PFV--RDLSQELITVDVSHKVDDSSGSIGRRYAR--TDELGVPYAVTVDFDTIKEPHTVT 267
PFV R + +EL D K D G + R + +LG +T D T E +
Sbjct: 146 PFVKRRKILEELSDKDWDTKTMDEVGEQADKVFRALSAQLGSQKYLTGDLPT--EADALL 203
Query: 266 LRERDSMRQVRLPMADVPTVVRDLSNSKILWSDVEQKYPK 147
++ VRLP+ ++ +++ SN +EQ+Y K
Sbjct: 204 FGHMYTLITVRLPLTNITNILKKYSNLIEFTKRIEQQYFK 243
>Z50070-6|CAA90395.1| 548|Caenorhabditis elegans Hypothetical
protein F43G6.6 protein.
Length = 548
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 227 MADVPTVVRDLSNSKILWSDVEQK 156
MA P V+D+S +K LWSDV K
Sbjct: 232 MARPPRFVQDISMAKRLWSDVTSK 255
>AL032628-3|CAA21554.2| 164|Caenorhabditis elegans Hypothetical
protein Y38H6A.2 protein.
Length = 164
Score = 28.7 bits (61), Expect = 5.7
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +1
Query: 100 CVSYTDVPFTVSCCSNLGYFCSTSDHNILLLDKSLTTVGTSAMGNLTCLILSLSLRVTVW 279
C +Y V T NLGY C ++I ++DK +G+ G+ +IL ++ V+
Sbjct: 40 CQTYRIVE-TCDTIPNLGYICCCVHYSITIIDKQ---IGSRHEGSFFAVILIQIFQIFVF 95
Query: 280 --GSLIVSKSTVT 312
+L +K+ VT
Sbjct: 96 FKNTLDAAKNQVT 108
>AL032658-4|CAA21746.1| 283|Caenorhabditis elegans Hypothetical
protein Y76A2B.5 protein.
Length = 283
Score = 28.3 bits (60), Expect = 7.5
Identities = 27/120 (22%), Positives = 53/120 (44%)
Frame = -3
Query: 458 LSGNAEFQPFVRDLSQELITVDVSHKVDDSSGSIGRRYARTDELGVPYAVTVDFDTIKEP 279
L N PF D+S + + +V++S I R T+ + + + +
Sbjct: 45 LGPNDSQYPFQGDVSFAHKPLSIRQQVENSK--IERVMDDTEHNLINLLSNTNIE-VDRT 101
Query: 278 HTVTLRERDSMRQVRLPMADVPTVVRDLSNSKILWSDVEQKYPKFEQQETVKGTSV*LTQ 99
H L+E ++M +++ ADV + + K+L +++ +P+ E Q+ T LTQ
Sbjct: 102 HLAQLKE-EAMEEIQANAADVEIELSAIEAPKLLKKEMKYLFPQMETQKMNNVTVFNLTQ 160
>Z74035-3|CAA98481.1| 808|Caenorhabditis elegans Hypothetical
protein F47G9.4 protein.
Length = 808
Score = 27.9 bits (59), Expect = 9.9
Identities = 23/102 (22%), Positives = 49/102 (48%)
Frame = -3
Query: 755 LDNAALEEMQKELDSNGEYTLITARGEFKLTPSLVNVKKTQKTIHVEEIIPSVIEPSFGV 576
+ +AAL+ MQ E+ + L R + ++ +K ++ +++ E ++ + +
Sbjct: 418 MHSAALDGMQSEMQEIWQEQLDRVRRQ-----QIIYREKVEEILNLRETARQILTAAKQL 472
Query: 575 GRILYCILEHNFRMREGDEQRTYFSLPPTVAPMKCVVLPLSG 450
+ CIL N + D +R + PP APM+ + L ++G
Sbjct: 473 VPYVSCILNMNAMI---DPKRCH---PPDPAPMESICLEITG 508
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,186,817
Number of Sequences: 27780
Number of extensions: 405893
Number of successful extensions: 1085
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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