Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_H17
         (865 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   2.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   6.3  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   8.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   8.4  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = -3

Query: 812 AIGKAFXKDSQAINDTLXTLDNAA--LEEMQKELDSNGEYTLITARGEFKLTPSLVNVKK 639
           A  + + KDS  +     T+++      +M     +N EY L+TA   F   P+L+   K
Sbjct: 437 ANNQPYTKDSYTVAGMGETIEDLLHFCRQMYAMKVNNAEYALLTAIVIFSERPNLLEGWK 496

Query: 638 TQK 630
            +K
Sbjct: 497 VEK 499


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 525 R*TKNIFFTSTNSCSHEMCCSTLEW 451
           R T+ +   S N   H +C S L W
Sbjct: 279 RSTERMIAASVNLICHILCMSDLHW 303


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 588 RFNDTWYNFLYMNCFLSLLNI 650
           RF DTW  F  M    S+LN+
Sbjct: 96  RFCDTWIAFDVMCSTASILNL 116


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 597 DTWYNFLYMNCFLSLLNI 650
           D W +F  ++C  S+LN+
Sbjct: 115 DLWVSFDVLSCTASILNL 132



 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 521 EQRTYFSLPPTVAPMKCVVLPLSGNAEFQP 432
           E   YF + PTV   + V +    N++ QP
Sbjct: 244 EAHCYFDIEPTVQQHQPVTVNRQLNSDVQP 273


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,477
Number of Sequences: 438
Number of extensions: 4802
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)