Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_H12
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    28   1.5  
SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual    27   2.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.6  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   3.5  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    26   4.6  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    26   4.6  
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    26   6.0  
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    26   6.0  

>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = -1

Query: 558 SQEPSYVCL--HLILS*TMSTRAAGIFREEKTS*KSVAP*KVSTPPASAPSNWIASPTTY 385
           S EP Y+CL  H  L    S R++   R+ +   + +AP  ++T   +  S W+ S   +
Sbjct: 263 SFEPLYICLQVHSYLGLLSSFRSS-FERDRRRQQEFLAPKSLTTLDMAVVSEWLNSIAGF 321

Query: 384 LLVNF 370
           ++V +
Sbjct: 322 MIVEY 326


>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +2

Query: 197 PNAVSVDTDSDNGTSANAHVGHGDSSRSVCGQFTVENLDF 316
           PN +++ + S+ GTS+ +H    D   +V  +FT  NL+F
Sbjct: 199 PNVLAIGS-SEVGTSSYSHHADIDIGVAVIDRFTFSNLEF 237


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +3

Query: 378  PVNKL*EMLSNSKVLKPAALTPSTEPRTFRMFSPPGRCQPPAYSLFTIGSNGDKRNWA 551
            PVN     L+ +   +P+   P+        F+P  + QPPA S     S  D  NW+
Sbjct: 1594 PVNNSGSPLAMNAAGQPSLAVPAVPSAPSNHFNPFAKMQPPAPSPLQ-PSGHDSDNWS 1650


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 383  YWSTSLVLELEFCFGLNRRC 324
            YW   L + L  CF LN+RC
Sbjct: 2328 YWIVQLNIFLSRCFDLNQRC 2347


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 121 GRISDFLNKLPYNLEKYQSQVSRVLEYVSEY 29
           G +    ++ P  L K   Q+S  LEY SEY
Sbjct: 148 GDVETIASQSPLELSKLVEQISGSLEYKSEY 178


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
 Frame = -3

Query: 511 NEYAGGWHLPGGENILKVRGSVEGVNAAGFSTFE---LDSISYNLFTGQLHLSLSLNSVS 341
           ++YA   H   G  +   R   +G   AG+  +    LD+I  N+ T Q+  S     + 
Sbjct: 631 SQYARS-HQLNGITLSGDRSDKKGALTAGYRDYRNSRLDAIK-NVKTYQIKFS----DLQ 684

Query: 340 ASIDAAEGEVQIFDRKLTA 284
            S++    E++ FD+K+TA
Sbjct: 685 ESLEKCRSEIESFDQKITA 703


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 413 EGAEAGGVDTFYGATDFQDVFSSRKMPAARVLIVHDRIKWRQ 538
           +GA+ G +    G  DFQ  F+ R  P +     +    WRQ
Sbjct: 20  QGADTGSISGILGMRDFQSRFADRYNPISN---SYSYSAWRQ 58


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 214 DGYSVRNVELELSIGEINSEIQLNLFGREVGGRISDFL 101
           D Y   NV   LS+G++  +++L       G R+SD L
Sbjct: 300 DTYQRTNVPTVLSLGDVCGKLELTPVAIAAGRRLSDRL 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,510,604
Number of Sequences: 5004
Number of extensions: 46154
Number of successful extensions: 179
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)