Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_H02
(764 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S... 146 2e-36
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch... 138 6e-34
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 27 2.2
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 27 3.9
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 3.9
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 26 5.1
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 6.8
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 6.8
>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 146 bits (355), Expect = 2e-36
Identities = 76/139 (54%), Positives = 90/139 (64%)
Frame = -2
Query: 430 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 251
V KA AQ+ V KG H K RK+R S FRRPKT E R PKY RKS+P +R+D Y II
Sbjct: 3 VGKAKGAQKTVQKGIHNKVARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKII 62
Query: 250 KFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKXX 71
P+ SE+AMKKIED+NTLVF VH ANK IK AVKKLY ++ K+NTLIRP+G KK
Sbjct: 63 VNPINSESAMKKIEDDNTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKAF 122
Query: 70 XXXXXXXXXXXXANKIGII 14
AN+IG +
Sbjct: 123 VKLSADADALDVANRIGFL 141
>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 138 bits (335), Expect = 6e-34
Identities = 72/139 (51%), Positives = 87/139 (62%)
Frame = -2
Query: 430 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 251
V KA AQ+ V KG H K +K+R S FRRPKT + R PKY RKS+ R+D Y II
Sbjct: 3 VAKAKGAQKTVQKGIHNKVAKKVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKII 62
Query: 250 KFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKXX 71
P+ SE+AMKKIED+NTLVF VH ANK IK AV+KLY + K+NTLIRP+G KK
Sbjct: 63 VNPINSESAMKKIEDDNTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAF 122
Query: 70 XXXXXXXXXXXXANKIGII 14
AN+IG +
Sbjct: 123 VKLSADADALDVANRIGFL 141
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 27.5 bits (58), Expect = 2.2
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +2
Query: 266 IHAISLRQRLPWVFRVPR--RFKRLGSAEMHRVANFPYSLPMFTFYNLPLSLKCFSNRFH 439
+ A + R P R P+ RF+ L S++ + + PY+ P F S + + H
Sbjct: 196 LRASPVSSRTPSPTRFPKHARFQTLNSSDSASIYSSPYTSPTLEFSKKDASARSDILKMH 255
Query: 440 YFFLSLNPSL 469
S PSL
Sbjct: 256 RRTKSATPSL 265
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 8 SLYDANFVGNVQCVIISSESYVRFLLTIRPDECVDF 115
+++ A FV + + +S +RFL ++P +C DF
Sbjct: 602 TVFIAKFVESYYFLTLSVRDPIRFLQRMKPYDCYDF 637
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 41 QCVIISSESYVRFLLTIRPDECVDFSNIY 127
+C+ I E + FL I+P E V F ++
Sbjct: 518 RCIEIGGEQFSGFLTNIKPFEAVTFQKLF 546
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 530 SQNCQTQASSFQIEDCTEAQKDWD*GTKKS 441
S+NCQ + +++C EA D D G K+
Sbjct: 479 SENCQKLSKQIPLDECNEALFDDDNGDYKA 508
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.8 bits (54), Expect = 6.8
Identities = 9/51 (17%), Positives = 25/51 (49%)
Frame = -2
Query: 271 MDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINV 119
+ A+++ +F E ++ +DN T I H + ++ + A +++ +
Sbjct: 1090 LQAFDLSRFEFIKEIFLELYDDNETNASIAHQISTQNGLDATETSFFELQI 1140
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 2 RNSLYDANFVGNVQCVIISSESYVRFLLTIRPD 100
+++ +NF NV C I +S F IRPD
Sbjct: 865 QHTFISSNFFENVPCYISLEQSLQNFQNDIRPD 897
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,280,480
Number of Sequences: 5004
Number of extensions: 43369
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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