Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_G22
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   2.5  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    26   4.4  
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit...    25   5.8  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    25   5.8  
SPBC216.06c |swi1||replication fork protection complex subunit S...    25   5.8  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    25   7.6  

>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 414 SRGSKIRAAFPKLFI-FEEYSSPXYCIYVHSKNPGTM 521
           +R SK+ A +P L   F  +  P Y I + S +PG++
Sbjct: 225 TRVSKLFAGYPNLIQGFNTFLPPGYSIEISSADPGSL 261


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 441 FPKLFIFEEYSSPXYCIYVHSKNPGTM 521
           F +L + ++YS   +C Y H KNP ++
Sbjct: 30  FEELLVEKQYSEE-HCAYCHIKNPNSI 55


>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
           Rep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 472

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +3

Query: 321 RSTFFLQ*QLYMSRKSLTAVSVN---EHDSLPRSSRGSKIRAAFP 446
           +S+F     L M R +  A   N   + DS+P +S   KI+AAFP
Sbjct: 232 QSSFGDDLDLGMQRSATWAPGYNYPSKFDSIPFASASPKIKAAFP 276


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +3

Query: 450 LFIFEEYSSPXYCIYVHSKNPGTMRTSGDITY 545
           LFI+E +S P  CI   S   G    + D  Y
Sbjct: 247 LFIWESFSEPPVCITDQSDLDGLFNGNSDWVY 278


>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 449 TIYLRGV*FPXLLHLCPFEKSRNHADIR 532
           T  L+   F  LL LC FE+S N+ D++
Sbjct: 771 TALLKDGKFRLLLELCGFEESDNNIDVQ 798


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 192 SPALMNIL*RSGPTPGAIGTDRVSLIQDFK 281
           +P+LM ++   GP PG IG   + ++Q+ +
Sbjct: 727 APSLMTMV-NGGPVPGDIGEASIPVVQNLQ 755


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,294,568
Number of Sequences: 5004
Number of extensions: 44698
Number of successful extensions: 114
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)