Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_G22
         (561 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0103 - 12383585-12384700                                         29   3.4  
02_02_0248 - 8267332-8268276,8268338-8269288                           28   5.9  
12_01_1069 - 11060045-11060262,11060404-11060545,11060624-110607...    27   7.7  

>09_03_0103 - 12383585-12384700
          Length = 371

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 29  FWTPKHCLFTFTKTYVRTFPKHLYYSKLDPSRQKRSLRL 145
           ++TPKH LF   K +V+   ++LY    DPS     L++
Sbjct: 304 YFTPKHTLFHEGKIWVQLLARNLYC--YDPSSSSTELKM 340


>02_02_0248 - 8267332-8268276,8268338-8269288
          Length = 631

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
 Frame = +2

Query: 11  NSFFNYFWTPKHCLFTFTKTYVRTF---PKHLYYSKLDPSRQKR 133
           N  F +F+T K   +T    Y+RT    P H  + KL    Q R
Sbjct: 274 NQAFQFFYTKKEAAYTVVGIYLRTLHHAPGHRGHCKLQRQSQGR 317


>12_01_1069 -
           11060045-11060262,11060404-11060545,11060624-11060776,
           11060942-11061013,11062774-11063082,11063323-11063378,
           11066436-11066533,11066616-11066700,11066800-11067001,
           11067471-11067542,11069555-11069624,11071829-11072038,
           11072337-11072609,11073912-11074183,11075354-11075557
          Length = 811

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 112 RSKSSKAIPPSLSHLEARQRQKRSPYSRQ 198
           R+  S A+ P+L+HL  +  ++  PY+R+
Sbjct: 780 RALRSSALGPTLAHLRGKNTKRGRPYNRK 808


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,641,969
Number of Sequences: 37544
Number of extensions: 282106
Number of successful extensions: 590
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)