Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_G22
         (561 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    25   0.69 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   2.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   2.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   2.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.9  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 30  FGHLNIVYLHLQKHTYVHS 86
           FGH+ I Y+H   H Y+ S
Sbjct: 367 FGHVAISYIHDPDHRYLES 385


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 75   YVHSQNTYIIVS*IQVVKSDPSVSFTLR 158
            Y H+ N +  +   QV ++D  + FT+R
Sbjct: 1679 YHHNVNKHCTIHRTQVKETDDKICFTMR 1706


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -3

Query: 310 ICLTKMY*--CDLKS*INETRSVPIAPGVGPDRYNMFIRAGESTA 182
           IC+ ++Y   CD     +  + +P++   G DRY    + G+  A
Sbjct: 36  ICVPEIYSKECDEMKKDSAVKGIPVSCISGRDRYECIEKVGKKEA 80


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -3

Query: 310 ICLTKMY*--CDLKS*INETRSVPIAPGVGPDRYNMFIRAGESTA 182
           IC+ ++Y   CD     +  + +P++   G DRY    + G+  A
Sbjct: 36  ICVPEIYSKECDEMKKDSAVKGIPVSCISGRDRYECIEKVGKKEA 80


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -3

Query: 310 ICLTKMY*--CDLKS*INETRSVPIAPGVGPDRYNMFIRAGESTA 182
           IC+ ++Y   CD     +  + +P++   G DRY    + G+  A
Sbjct: 36  ICVPEIYSKECDEMKKDSAVKGIPVSCISGRDRYECIEKVGKKEA 80


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/49 (22%), Positives = 24/49 (48%)
 Frame = +3

Query: 399 SLPRSSRGSKIRAAFPKLFIFEEYSSPXYCIYVHSKNPGTMRTSGDITY 545
           SLP +   +  +  F KLF  +        + V  ++  ++ T+G+++Y
Sbjct: 677 SLPSTLTKNSKQGLFSKLFAKKVKKDKDIILNVPKESTQSLTTTGNVSY 725


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,807
Number of Sequences: 438
Number of extensions: 3300
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)