Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_G20
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   253   2e-68
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   251   1e-67
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    42   1e-04
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    29   1.0  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    29   1.0  
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom...    27   4.1  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.5  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   7.2  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    26   7.2  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  253 bits (620), Expect = 2e-68
 Identities = 120/173 (69%), Positives = 137/173 (79%)
 Frame = -2

Query: 804 DGTHVINLRRTWEKLVLAARAVVAIENPXDVFVISSRPFGQRAVLKFAAHTGATPIAGRF 625
           DG H+INL +TWEKLVLAAR +  IENP DV VISSRP+G RAVLKFAAHTGAT IAGRF
Sbjct: 47  DGIHIINLGKTWEKLVLAARVIATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRF 106

Query: 624 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPC 445
           TPG FTN I   +REPRL+IV DP  D Q I EAS+VNIPVIALC+TDS L  VD+AIP 
Sbjct: 107 TPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPI 166

Query: 444 NTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 286
           N K   SIGL W+LLAREVLRLRG + R   W+V+ DL+FYRDPEE E++E+Q
Sbjct: 167 NNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  251 bits (614), Expect = 1e-67
 Identities = 117/175 (66%), Positives = 137/175 (78%)
 Frame = -2

Query: 804 DGTHVINLRRTWEKLVLAARAVVAIENPXDVFVISSRPFGQRAVLKFAAHTGATPIAGRF 625
           DG H++NL +TWEKLVLAAR +  IENP DV V+S+R +G RAVLKFAAHTGAT IAGRF
Sbjct: 46  DGVHILNLGKTWEKLVLAARVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRF 105

Query: 624 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPC 445
           TPG FTN I   +REPRL++V DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP 
Sbjct: 106 TPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPT 165

Query: 444 NTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 280
           N K   SIGL+W+LLAREVLR+RG L R   WDV+ DL+FYRDPEE E++E+  K
Sbjct: 166 NNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = -2

Query: 579 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 400
           P L+++L+P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239

Query: 399 AR 394
           +R
Sbjct: 240 SR 241


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = -2

Query: 792 VINLRRTWEKLVLAARAVVAIENPXDVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 616
           V+++R TW +LV+  +  + + N  ++ +I++    +  V+ FA H           PG
Sbjct: 89  VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
 Frame = -2

Query: 657 HTGATPIAGRFTPGAFTNQIQAAFR--EPRLLIVLDPAQDHQPI---TEASYVNIPVIAL 493
           +  A P  G       T+ I A F+  +P + ++     D   +   T A    +  + L
Sbjct: 29  YVNAAPHLGHLYSLVLTDAI-ARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQL 87

Query: 492 CNTDSPLRFVDIAIPCNTKSSHSI 421
           C+ +S  RF D+A+  NTK +H I
Sbjct: 88  CDRNSK-RFADLAVAANTKFTHFI 110


>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +2

Query: 419 PIEWEDLVLHGMAMSTNLSGESVLHKAITGMLTYEASVMG 538
           PIE+E++ + GM  +   SG++ LH+AI  +   +  + G
Sbjct: 49  PIEFEEIDVTGMEKNNKSSGDA-LHEAIQSLKRNKVGLKG 87


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 423 IGLMWWLLAREVLRLRGVLPRDQRWD 346
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -3

Query: 368 FPVTSAGML--WLICSSTVTLKKVKRM 294
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +1

Query: 529 SNGLMVLCRIQYNQETRFTECSLDLVSKSTWCETSRNRRSTGVRGKLQYSTLTEGP 696
           S GL  L R +   E  F +     +S + W  T +   + G+RG   ++   EGP
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,257,702
Number of Sequences: 5004
Number of extensions: 66094
Number of successful extensions: 165
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)