Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_G18
         (329 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    27   0.56 
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    27   0.73 
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    25   3.0  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    24   5.2  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    24   6.8  
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    24   6.8  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    23   9.0  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    23   9.0  

>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 27.5 bits (58), Expect = 0.56
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +3

Query: 27  SIAFKIAFWLSISERSKCMGPSRCRQNSQEVSRRNMQSTQQVKYMQRQLGRCRQ 188
           +I  KI   L+I ERS  +     R  S+ +SRR  +  Q++   QR+L    Q
Sbjct: 194 AIREKIGRELNIPERSVTIWFQNRRAKSKLISRRQEEERQRILREQRELDSLNQ 247


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 27.1 bits (57), Expect = 0.73
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +3

Query: 99  RQNSQEVSRRNMQSTQQVKYMQRQLGR 179
           +Q +Q+  + N  S QQ++Y+  +LG+
Sbjct: 541 KQRNQKFLKNNATSIQQIQYLDEELGK 567


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 24  NSIAFKIAFWLSISERSKCMGPSRCRQNSQEVSRRNMQST 143
           N I   I   L   ERS+ + PS C + SQ      ++ST
Sbjct: 54  NRIHSAIQMTLCDFERSQILAPSECVRGSQSECVSKLEST 93


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 127 RLLTSWLFCLHLLGPIHLLRSLIDNQKAILNAIEFRLCD 11
           +L + WLF L     ++LL SLI N+K       ++L D
Sbjct: 5   KLESKWLFSLTESQKLYLLISLIINKKLPEAKFVYKLLD 43


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 93  RCRQNSQEVSRRNMQSTQQVKYMQRQLG 176
           +C QN+  +S  N        Y+Q QLG
Sbjct: 97  KCYQNALAISPNNESLWYDAAYLQAQLG 124


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 110 AILPTPTRPHTLTS 69
           ++L TPTRPH L++
Sbjct: 281 SVLNTPTRPHALST 294


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
          role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 31 SHSK*PFGCQSANEVSVWGRV 93
          ++SK PFG   ++ +S W R+
Sbjct: 32 NNSKSPFGLNPSSRISQWPRI 52


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 283 RPSIILKMPMHN 318
           RPSI+ K P+HN
Sbjct: 182 RPSIVEKFPLHN 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,003,272
Number of Sequences: 5004
Number of extensions: 15278
Number of successful extensions: 45
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)