Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_G12
(891 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0207 - 17927753-17927983,17928077-17928178,17928273-179285... 154 1e-37
04_03_0267 + 13660546-13660953,13661937-13662143,13662379-13662522 126 2e-29
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637... 109 4e-24
09_04_0480 + 17958726-17958926,17959294-17959382,17960176-179602... 29 3.8
02_01_0462 + 3332464-3332470,3333606-3335806 29 5.0
02_01_0340 + 2415272-2415486,2415883-2416308,2416313-2417243 29 5.0
02_01_0460 + 3323236-3323950,3325087-3326025,3326104-3326723 28 8.7
>06_03_0207 - 17927753-17927983,17928077-17928178,17928273-17928502,
17929257-17929343,17931263-17931389,17931485-17931628,
17931920-17931985,17932136-17932254,17932437-17932551,
17932626-17932732,17932969-17932983,17933810-17933900,
17934528-17934671,17934750-17934980,17935093-17935248,
17935330-17935483,17935973-17936117,17936241-17936355
Length = 792
Score = 154 bits (373), Expect = 1e-37
Identities = 79/144 (54%), Positives = 98/144 (68%), Gaps = 2/144 (1%)
Frame = -3
Query: 505 ADIAVDVRKLDFRIGKIVEISKHPDADSLYVEKIDCGEENPRTVVSGLVNHVPIDEMRER 326
A++ V V KLD R+G I + KHPDADSLYVE+ID GEE PRTVVSGLV +P++EM+ R
Sbjct: 625 AEVDVTVAKLDIRVGLIRKAQKHPDADSLYVEEIDVGEEAPRTVVSGLVKFIPLEEMQNR 684
Query: 325 IVMVLCNLKPVKMRGVTSEAMVMCASSAE--KVEVLIPPPDAIPGDLVVCEGYPREPEAV 152
V VLCNLKPV MRG+ S AMV+ AS+ + KVE++ PP A G+ V GY EPEA
Sbjct: 685 KVCVLCNLKPVAMRGIKSHAMVLAASNEDHTKVELVEPPESAAVGERVTFAGYSGEPEAS 744
Query: 151 LXPKKKXFETCAPDLKTXNEKRAC 80
L K K +E + DL + E AC
Sbjct: 745 LNAKSKTWEKLSADLHSNGELVAC 768
>04_03_0267 + 13660546-13660953,13661937-13662143,13662379-13662522
Length = 252
Score = 126 bits (304), Expect = 2e-29
Identities = 64/134 (47%), Positives = 92/134 (68%), Gaps = 8/134 (5%)
Frame = -3
Query: 478 LDFRIGKIVEISKHPDADSLYVEKIDCGEENPRTVVSGLVNHVPIDEMRERIVMVLCNLK 299
LD R+G++V+ +HP+AD+LYVE++D GEE PRT+ SGLVN++PID++++ V+VL NLK
Sbjct: 88 LDIRVGRVVKAWRHPEADTLYVEEVDVGEEQPRTICSGLVNYLPIDQLQDSNVIVLANLK 147
Query: 298 PVKMRGVTSEAMVMCASSA--EKVEVLIPPPDAIPGDLV---VCEGYPREPEAV---LXP 143
P MRG+ S M+M AS A E VE+L PP ++PG+ V +G R+ EA
Sbjct: 148 PRNMRGIKSNGMLMAASDASHENVELLTPPEGSVPGERVWFGTEDGKDRQSEAASPNQVQ 207
Query: 142 KKKXFETCAPDLKT 101
KKK +E+ P L+T
Sbjct: 208 KKKIWESVQPHLRT 221
>01_06_1167 -
35062766-35062870,35063165-35063228,35063647-35063738,
35064137-35064205,35064322-35064412,35064509-35064732,
35065064-35065180,35065583-35065651,35066172-35066237,
35066335-35066505,35066581-35066661,35067620-35067700
Length = 409
Score = 109 bits (261), Expect = 4e-24
Identities = 59/136 (43%), Positives = 82/136 (60%), Gaps = 2/136 (1%)
Frame = -3
Query: 502 DIAVDVRKLDFRIGKIVEISKHPDADSLYVEKIDCGEENPRTVVSGLVNHVPIDEMRERI 323
D +V L+ ++G I + KHP ADSL VE+ID G+ N VVSGL +E+ R
Sbjct: 244 DSECNVSILNIQVGLIRKAWKHPSADSLLVEEIDLGDGNVHQVVSGLAKFFSPEELVNRH 303
Query: 322 VMVLCNLKPVKMRGVTSEAMVMCASSAEK--VEVLIPPPDAIPGDLVVCEGYPREPEAVL 149
V+++ N+KP K+R V S +V+CAS+ + VE LIPP A PG+ + G+ +PE VL
Sbjct: 304 VVLITNVKPGKLRDVMSAGLVLCASNQDHTVVEPLIPPEGAKPGERISFAGFDGKPEDVL 363
Query: 148 XPKKKXFETCAPDLKT 101
PKKK + PDL T
Sbjct: 364 NPKKKQLDKITPDLHT 379
>09_04_0480 +
17958726-17958926,17959294-17959382,17960176-17960242,
17960329-17960444,17960978-17961044,17961158-17961206,
17961630-17961715,17961825-17962078,17962158-17962213,
17962683-17962768,17963047-17963139,17963790-17964219,
17964338-17964861,17964962-17965190,17965271-17965566
Length = 880
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 328 RIVMVLCNLKPVKMRGVTSEAMVMCASSAEKVEVLIPPPDAI 203
RIV C++ PV+ V +E + C S E ++V P+ +
Sbjct: 338 RIVYSTCSMNPVENEAVVAEILRRCGDSVELLDVSNELPELV 379
>02_01_0462 + 3332464-3332470,3333606-3335806
Length = 735
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 736 NNTLSAKVNAAKAELIGLEISHGKRQYAIPGKTDLLETTKIV 611
N TL A +AA L +++SH AIP +L T ++
Sbjct: 66 NGTLDALYSAAFENLTTIDLSHNNLDGAIPANISMLHTLTVL 107
>02_01_0340 + 2415272-2415486,2415883-2416308,2416313-2417243
Length = 523
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 162 GSLGYPSHTTKSPGIASGGGIKTSTFSADDAH 257
G+ G + T PG A+GGG +T AD +H
Sbjct: 21 GASGSGTSKTPHPGCAAGGGCGCATVEADRSH 52
>02_01_0460 + 3323236-3323950,3325087-3326025,3326104-3326723
Length = 757
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 736 NNTLSAKVNAAKAELIGLEISHGKRQYAIPGKTDLLETTKIV 611
N TL A +AA L +++SH AIP +L T I+
Sbjct: 77 NGTLDALYSAAFENLTTIDLSHNNLDGAIPANICMLRTLTIL 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,430,284
Number of Sequences: 37544
Number of extensions: 332405
Number of successful extensions: 838
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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