Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_G11
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    28   1.7  
SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1 |S...    27   2.3  
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as...    27   2.3  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    27   3.0  
SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual    27   3.0  
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces...    25   9.1  

>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 18/60 (30%), Positives = 23/60 (38%)
 Frame = -2

Query: 612 RYLTTLRCFTPLMYILCVAHVCNYGLFNTLIGLIKVMKINFLKCENKYIVRRHFMKTCFL 433
           RYL     FTP+ Y+LC A   N  L N L+     +   FL           F   C +
Sbjct: 232 RYLQAQGIFTPITYVLCFAAPLNI-LLNYLLVWHPTIGFGFLGAPVAVATTFWFQSICLI 290


>SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 445

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 541 WFIQHSYRFNKSYENKFLK 485
           WF +HS R  K YE + LK
Sbjct: 420 WFARHSSRLTKLYETRILK 438


>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
           associated subunit Sfc1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
 Frame = +3

Query: 654 GVQSVD----S*FGTASRRGRDVTVTSLRPLQERDPLWRRRAV 770
           GV+SV     S  G  S+  ++V + +L+PL E+ P+W RRA+
Sbjct: 199 GVESVPTCRHSKLGEPSKTIQEV-IEALKPLFEKRPVWTRRAL 240


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 20/48 (41%), Positives = 26/48 (54%)
 Frame = +1

Query: 595 KSGKVPAAMSRETSHCTGVEAFSRSTPSLAQHRVAAVTSP*RHSARYK 738
           + GK  +  S ETS    V+    ST   A  RVA+VTSP RH++  K
Sbjct: 619 QKGKGTSMNSEETS----VKHGPTSTIGKALQRVASVTSPSRHNSDSK 662


>SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 541 WFIQHSYRFNKSYENK 494
           WFI +SY+  K YENK
Sbjct: 27  WFIGNSYKPRKDYENK 42


>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 350

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 707 RHRDVTPPATRARPSLAAPG 766
           +HR VT PA RA  + +APG
Sbjct: 5   QHRLVTQPAIRAYEAFSAPG 24


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,682
Number of Sequences: 5004
Number of extensions: 48568
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)