Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_G10
(590 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0469 - 3359156-3359500,3359595-3359680,3359766-3359811,335... 179 2e-45
02_04_0100 - 19730137-19730237,19731215-19731344,19731419-197315... 176 9e-45
04_03_0871 - 20441689-20441756,20442220-20442349,20442422-204425... 175 2e-44
02_01_0045 + 307058-307552,308670-308716,308779-308866,309664-30... 58 7e-09
12_01_0916 + 8959866-8959958,8960429-8960583,8960676-8961055,896... 28 6.4
09_03_0201 - 13466189-13466422,13466508-13467280,13467490-134676... 28 6.4
06_03_0265 - 18923597-18924367,18924459-18924704 28 6.4
09_04_0520 + 18286435-18287279,18287818-18288697 27 8.5
08_02_1092 + 24267737-24268641,24269005-24269884 27 8.5
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362... 27 8.5
05_03_0656 - 16676406-16676654 27 8.5
04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783... 27 8.5
>02_01_0469 -
3359156-3359500,3359595-3359680,3359766-3359811,
3359897-3360016,3360622-3360624
Length = 199
Score = 179 bits (435), Expect = 2e-45
Identities = 86/108 (79%), Positives = 95/108 (87%)
Frame = -2
Query: 487 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 308
M+ RK + KEE VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSKRKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 59
Query: 307 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTP 164
KVKADRDE+SPYAAMLA+QDVA++CK LGITALHIKLRATGGNKTKTP
Sbjct: 60 KVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTP 107
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -3
Query: 177 KQRHPGPGAQXXXXXXXXXSMKIGRI 100
K + PGPGAQ MKIGRI
Sbjct: 103 KTKTPGPGAQSALRALARSGMKIGRI 128
>02_04_0100 -
19730137-19730237,19731215-19731344,19731419-19731504,
19732410-19732455,19732558-19732680,19732779-19732781
Length = 162
Score = 176 bits (429), Expect = 9e-45
Identities = 84/108 (77%), Positives = 93/108 (86%)
Frame = -2
Query: 487 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 308
M+ RK +E VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSGRKKTREPKEENVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 60
Query: 307 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTP 164
KVKADRDE+SPYAAMLA+QDVA++CK LGITALHIKLRATGGNKTKTP
Sbjct: 61 KVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTP 108
Score = 36.7 bits (81), Expect = 0.014
Identities = 23/48 (47%), Positives = 25/48 (52%), Gaps = 11/48 (22%)
Frame = -3
Query: 177 KQRHPGPGAQXXXXXXXXXSMKIGRI-----------EDVTPVPSDST 67
K + PGPGAQ MKIGRI EDVTPVP+DST
Sbjct: 104 KTKTPGPGAQSALRALARSGMKIGRIADDVLSIFCHTEDVTPVPTDST 151
>04_03_0871 -
20441689-20441756,20442220-20442349,20442422-20442507,
20444271-20444316,20444425-20444547,20445302-20445370
Length = 173
Score = 175 bits (427), Expect = 2e-44
Identities = 84/105 (80%), Positives = 93/105 (88%)
Frame = -2
Query: 478 RKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVK 299
+K + KEE VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKVK
Sbjct: 27 KKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVK 85
Query: 298 ADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTP 164
ADRDE+SPYAAMLA+QDVA++CK LGITALHIKLRATGGNKTKTP
Sbjct: 86 ADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTP 130
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/37 (62%), Positives = 25/37 (67%)
Frame = -3
Query: 177 KQRHPGPGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 67
K + PGPGAQ MKIGRIEDVTPVP+DST
Sbjct: 126 KTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDST 162
>02_01_0045 +
307058-307552,308670-308716,308779-308866,309664-309756,
309788-309950,310554-310627,310889-310927
Length = 332
Score = 57.6 bits (133), Expect = 7e-09
Identities = 36/62 (58%), Positives = 39/62 (62%), Gaps = 9/62 (14%)
Frame = -2
Query: 322 VTGGMKVKADRDEASPYAAMLAAQDVAEKCK------TLGITALH---IKLRATGGNKTK 170
V GGMK+KAD DE+SPYAAML +QDVA CK LG L I L A GGNKT
Sbjct: 211 VGGGMKIKADCDESSPYAAMLVSQDVALCCKYRTNGQILGDCFLEFCLIMLCAAGGNKTN 270
Query: 169 TP 164
TP
Sbjct: 271 TP 272
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 322 VTGGMKVKADRDEASPYAAMLAAQDVA 242
V GGM +K+D DE SP+ + + D++
Sbjct: 166 VGGGMNIKSDCDEPSPHCSCVGQTDIS 192
>12_01_0916 +
8959866-8959958,8960429-8960583,8960676-8961055,
8961142-8962122,8962699-8962829
Length = 579
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = -2
Query: 433 PQHLVGETVFGVAHIFASFNDTF----VHVTDLSGRETIARVTGGMKV 302
P HL G F +A F ++N+T ++ D R T+A TGG V
Sbjct: 481 PMHLHGFNFFVLAQGFGNYNETTDPAKFNLVDPQERNTVAVPTGGWAV 528
>09_03_0201 -
13466189-13466422,13466508-13467280,13467490-13467637,
13468176-13468313
Length = 430
Score = 27.9 bits (59), Expect = 6.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 202 LCARPLCQEFCISLLHPV 255
LC R LC+EFC+ + P+
Sbjct: 51 LCTRDLCEEFCLLRISPL 68
>06_03_0265 - 18923597-18924367,18924459-18924704
Length = 338
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 347 IRPGNYRPCHWWHEGEG*P**SVTLRCYVGGT 252
++ GN RP HWW E V L+C V T
Sbjct: 311 VKMGNIRPKHWWTPAE------VRLKCSVANT 336
>09_04_0520 + 18286435-18287279,18287818-18288697
Length = 574
Score = 27.5 bits (58), Expect = 8.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 393 CATPNTVSPTKCWGPR 440
C P+ V+PT C+GPR
Sbjct: 364 CIQPSCVAPTTCFGPR 379
>08_02_1092 + 24267737-24268641,24269005-24269884
Length = 594
Score = 27.5 bits (58), Expect = 8.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 393 CATPNTVSPTKCWGPR 440
C P+ V+PT C+GPR
Sbjct: 384 CIQPSCVAPTTCFGPR 399
>07_03_0562 + 19535801-19535865,19535972-19536017,19536125-19536223,
19536588-19536674,19537545-19537613,19537702-19538710,
19539217-19539365,19539453-19540487,19540488-19541003
Length = 1024
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +3
Query: 276 GDASSRSAFTFMPPVTRAIVSRPDKSVT*TNVSLNEAKMCATPNTVSPT 422
G SSR+ F+ PP R S P V + +S A + P VSPT
Sbjct: 860 GPDSSRNIFSAFPPAVRENQSIPSAPVAQSWISFG-ASSESKPTIVSPT 907
>05_03_0656 - 16676406-16676654
Length = 82
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -1
Query: 260 GGTGCSREMQNSWHNGLAHKAPCYWWKQNKD 168
GG G + + H+GLA A +WW D
Sbjct: 33 GGGGGEAASRRAGHSGLASGARGWWWNSGDD 63
>04_04_1197 + 31672019-31672325,31672431-31672740,31673334-31678335,
31678677-31678715
Length = 1885
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 469 CFFSGPWLSL*LESCQNLKEIWLKD 543
C +G WLSL L+ Q L+E+ L+D
Sbjct: 1241 CGITGKWLSLMLQHVQALQELSLED 1265
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,948,240
Number of Sequences: 37544
Number of extensions: 375314
Number of successful extensions: 860
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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