Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_G09
         (880 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1427 - 27020819-27020918,27021017-27021081,27021160-270212...    29   6.5  
08_02_0947 + 22897552-22897614,22898291-22898513,22898599-228988...    28   8.6  

>08_02_1427 -
           27020819-27020918,27021017-27021081,27021160-27021246,
           27021398-27021466,27022168-27022219,27022443-27022525,
           27022677-27022753,27022880-27023074,27023204-27023261,
           27023862-27023956,27024605-27024758
          Length = 344

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -3

Query: 524 ILSI*WVIVQSCFGLRKYL--CVVYAGVTIVIXXXXXXXXXXXKPNLTNGRVLTMF 363
           ++ + W+ +++ +GLRK++   V  AG+ +V+            PN   G +L +F
Sbjct: 126 VIILTWIFLKTKYGLRKFIGVGVCVAGLILVVFSDVHASDRAKGPNPLKGDLLVIF 181


>08_02_0947 +
           22897552-22897614,22898291-22898513,22898599-22898892,
           22899346-22900598
          Length = 610

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +2

Query: 680 GDQNKKTENLEQDLIVTFENIIIIFEQTVVLFPKFVFXSL 799
           G +NK  + + QDLI+ ++ + ++F   +V  P +V+ S+
Sbjct: 16  GQKNKDKKGISQDLILAYKTLGVVF-GGLVTSPLYVYPSM 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,281,205
Number of Sequences: 37544
Number of extensions: 457339
Number of successful extensions: 788
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)