Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_G02
         (778 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75525-7|CAH10769.1|  573|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z75525-6|CAA99765.2|  623|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AF003925-1|AAB61344.1|  573|Caenorhabditis elegans mRNA capping ...    28   6.5  
Z82051-2|CAB04816.1|  237|Caenorhabditis elegans Hypothetical pr...    28   8.6  
Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>Z75525-7|CAH10769.1|  573|Caenorhabditis elegans Hypothetical
           protein C03D6.3b protein.
          Length = 573

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -3

Query: 128 KMFFN--CKRSHNFVLIYVFNHPHIHSSLYILWQSL 27
           KM+ N   +R + F    VF+HPH+H     LW  L
Sbjct: 30  KMYDNQIAERRYQFHPAEVFSHPHLHGKKIGLWIDL 65


>Z75525-6|CAA99765.2|  623|Caenorhabditis elegans Hypothetical
           protein C03D6.3a protein.
          Length = 623

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -3

Query: 128 KMFFN--CKRSHNFVLIYVFNHPHIHSSLYILWQSL 27
           KM+ N   +R + F    VF+HPH+H     LW  L
Sbjct: 42  KMYDNQIAERRYQFHPAEVFSHPHLHGKKIGLWIDL 77


>AF003925-1|AAB61344.1|  573|Caenorhabditis elegans mRNA capping
           enzyme protein.
          Length = 573

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -3

Query: 128 KMFFN--CKRSHNFVLIYVFNHPHIHSSLYILWQSL 27
           KM+ N   +R + F    VF+HPH+H     LW  L
Sbjct: 30  KMYDNQIAERRYQFHPAEVFSHPHLHGKKIGLWIDL 65


>Z82051-2|CAB04816.1|  237|Caenorhabditis elegans Hypothetical
           protein T23D5.3 protein.
          Length = 237

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 9/12 (75%), Positives = 12/12 (100%)
 Frame = +3

Query: 480 FLYLTKPFEPIP 515
           FLY+TKPF+P+P
Sbjct: 161 FLYVTKPFQPLP 172


>Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical
           protein T05H10.1 protein.
          Length = 1326

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +3

Query: 60  DMWMVKNIN*YEIMTPLAIEKHFGLH 137
           D W V N    +  TPL IEK FG H
Sbjct: 431 DRWYVFNDTRVDFATPLEIEKSFGGH 456


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,977,713
Number of Sequences: 27780
Number of extensions: 268787
Number of successful extensions: 545
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)