Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_G02
         (778 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.4  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              21   9.7  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   9.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.7  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 695 VISRLFLSVSASSLYIVNYIGY 630
           + +R FL +S +S Y+V+  GY
Sbjct: 7   IAARSFLLLSIASTYVVSVAGY 28


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 305 RQ*NCYIYCL 334
           RQ  CY+YCL
Sbjct: 67  RQLKCYMYCL 76


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 6/23 (26%), Positives = 15/23 (65%)
 Frame = -3

Query: 332 SSRYNNFTDAVHRNVFYDNYVSN 264
           +++YN   +  ++ ++Y NY+ N
Sbjct: 101 NNKYNYNNNNYNKKLYYKNYIIN 123


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 545 YFLNYFEQTSRDRFKRL 495
           YF N +EQ S +  KR+
Sbjct: 344 YFQNEYEQPSEEDLKRI 360


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,374
Number of Sequences: 438
Number of extensions: 3815
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)