Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_G01
         (856 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    25   0.89 
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    25   1.2  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   3.6  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   3.6  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   6.3  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   6.3  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   8.3  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   8.3  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   8.3  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    22   8.3  

>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -1

Query: 238 SSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIPI 110
           S EP  +  +   Y+  +      + +K  Y N I  IE IP+
Sbjct: 76  SKEPKIISSLSNNYKYSNYNNYNNYNKKLYYKNYIINIEQIPV 118


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +3

Query: 102 AASIGIFSICLIILSYI 152
           A ++G+FS+  I++SYI
Sbjct: 82  AGAVGVFSVLTILISYI 98


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 172 YKHQEKAMYDNIIRQIENIPI 110
           Y +  K +Y N I  IE IP+
Sbjct: 109 YNNNYKKLYKNYIINIEQIPV 129


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 172 YKHQEKAMYDNIIRQIENIPI 110
           Y +  K +Y N I  IE IP+
Sbjct: 109 YNNNYKKLYKNYIINIEQIPV 129


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 35  ILYYCLMLPIVRNIQQLFKENA 100
           IL+Y  +L  +RN +++ +E A
Sbjct: 237 ILFYSRLLSSIRNHEKMLREQA 258


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 35  ILYYCLMLPIVRNIQQLFKENA 100
           IL+Y  +L  +RN +++ +E A
Sbjct: 237 ILFYSRLLSSIRNHEKMLREQA 258


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 102 AASIGIFSICLIILSYI 152
           A ++G+FS   I++SYI
Sbjct: 83  AGAVGVFSSPTILISYI 99


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -1

Query: 694 LFEFLKTNFRTNPNYMKMFELFNETLWRTSMGQHLDHVTGNRKTDYSSFTLDR 536
           LF FL+T  +  P Y     +  E+L     G+H   +     + Y+  TL+R
Sbjct: 25  LFSFLRTRTKLQPTYFHHTYIIYESL----CGRHEKRLLNELLSSYN--TLER 71


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -1

Query: 694 LFEFLKTNFRTNPNYMKMFELFNETLWRTSMGQHLDHVTGNRKTDYSSFTLDR 536
           LF FL+T  +  P Y     +  E+L     G+H   +     + Y+  TL+R
Sbjct: 25  LFSFLRTRTKLQPTYFHHTYIIYESL----CGRHEKRLLNELLSSYN--TLER 71


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 385 DDFIDCFGDEIKTGKVGTDI 326
           DDF+   G  I T KVG+ +
Sbjct: 18  DDFMKALGVGIMTRKVGSSV 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,601
Number of Sequences: 438
Number of extensions: 5288
Number of successful extensions: 20
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)