Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_F24
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    84   2e-17
SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr 1|...    43   5e-05
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    27   2.4  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    25   9.8  

>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 43/94 (45%), Positives = 54/94 (57%)
 Frame = -3

Query: 661 NLSIHILXKNLRPPGTKIRRIPKPDGNPFSLLLNFVSCPNYTYEFGSWLFFTIMTKCAPA 482
           N   HI+ ++LRP G+K R IP   G       N VS PNY +E   WLFF ++TK   +
Sbjct: 201 NFRTHIILRDLRPAGSKKRVIPTGYG------FNLVSFPNYFFESLGWLFFALLTKSWAS 254

Query: 481 GLFAAAGFYQMAVWAIGKHRNYKKEFPDYPKGRK 380
            +F   G  QM VWA  KH  Y KEFP+YP+ RK
Sbjct: 255 WIFLFVGSAQMFVWAKKKHARYLKEFPNYPRSRK 288


>SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -3

Query: 580 PFSLLLNFVSCPNYTYEFGSWL--FFTIMTKCAPAGLFAAAGFYQMAVWAIGKHRNYKKE 407
           P+  L  +VSCPNY  E+  W   +        P   F  +    M   A+  H+ Y K+
Sbjct: 207 PYGGLFQYVSCPNYFCEWIEWFGCYLAAGPSAEPFWWFFLSEILLMLPRALKAHQWYCKK 266

Query: 406 FPDYPKGRKA 377
           FP YP  R+A
Sbjct: 267 FPKYPANRRA 276


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 631  LRPPGTKIRRIPKPDGNPFSLLLNFVSCPNY 539
            L PP T +RR+ +P   P   L + ++C NY
Sbjct: 1587 LNPPLTVVRRLNEPPYVPDDYLPSVMTCVNY 1617


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -3

Query: 664 GNLSIHILXKNLRPPGTKIRRIPKPDGNPFSL 569
           GN+S+++L K++ PP   + ++   D   FS+
Sbjct: 403 GNVSLYVLDKDIEPPQPLLSQLILVDEISFSV 434


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,760,542
Number of Sequences: 5004
Number of extensions: 59952
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)