Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_F23
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    40   3e-04
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    29   0.60 
SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo...    28   1.1  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    26   5.6  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    26   5.6  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    25   9.8  
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    25   9.8  

>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
 Frame = -1

Query: 222 SKVVLLRNMVGPGDVD-----EELEPEVKDECNTKYGEVVKVLIFEMPNXPADEAVRRFV 58
           S+  LL NM  P +       +ELE +VK+EC+ KYG+VV + +  +PN    E  + FV
Sbjct: 506 SRCALLENMFNPAEETSPNWVQELEQDVKEECDEKYGKVVHIAV--VPN----ELGQIFV 559

Query: 57  ECKRIEXAMKAGVELNGR 4
           + +  + A KA   L+ R
Sbjct: 560 KFENADFAEKAITGLHQR 577


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 502 YGASSVAAKIMAKYGFKEGQGLGKKEXRNVGGLASREDFKTR 377
           +  +   AK++ K G+K+GQGLG     N  G+A     K R
Sbjct: 113 FNTTGFGAKMLEKMGYKQGQGLG----ANAEGIAEPVQSKLR 150


>SPAC2G11.04 |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 301

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = -3

Query: 490 SVAAKIMAKYGFKEGQGLGK 431
           +VA K++ + G+KEGQGLG+
Sbjct: 254 NVALKMLQRCGWKEGQGLGQ 273


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -3

Query: 421 RNVGGLASREDFKTRWSNYS 362
           RN+G L+  +D K++++NYS
Sbjct: 120 RNIGSLSVLDDTKSQYANYS 139


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/42 (23%), Positives = 18/42 (42%)
 Frame = -1

Query: 339 PPPGFTMQAPAGPDXXXXXXXXXXXSRNEPSITEIMKTPSKV 214
           PPP  + Q P+ P+               PS+  + +TP+ +
Sbjct: 34  PPPPSSQQPPSTPNGKEAASPSALKQNVRPSLNSVQQTPASI 75


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 386 EVFSTCKATDIPXFFFTQPLTLLKSIFC 469
           +V STC    I   +   PLT L  I C
Sbjct: 118 QVLSTCSPLWISVIYLLNPLTFLPGIAC 145


>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 284

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 478 KIMAKYGFKEGQGLGKKE 425
           K+++ YG+  G GLG+K+
Sbjct: 31  KLLSSYGWVNGNGLGEKQ 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,308,551
Number of Sequences: 5004
Number of extensions: 44033
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)