Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_F23
(666 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0166 + 18844468-18845184,18847394-18847690 87 1e-20
12_02_1111 - 26157796-26160330 36 0.022
05_04_0114 + 18090593-18092248 33 0.20
02_05_1041 - 33713561-33714564,33714844-33714904,33715640-337159... 32 0.36
01_05_0570 + 23347957-23348940,23349038-23349181,23349666-23350046 31 0.82
08_01_0473 - 4169754-4169938,4170039-4170121,4170297-4170347,417... 31 1.1
01_06_1446 - 37409074-37409783,37409896-37409986,37410645-374119... 31 1.1
10_06_0088 - 10538037-10539463,10539696-10539789 29 3.3
08_02_0036 - 11455762-11455802,11455996-11456104,11456207-114568... 29 3.3
04_03_0279 + 13824006-13825490 29 3.3
04_04_0489 + 25600543-25601368,25601441-25602282 29 4.4
04_04_0422 + 25098612-25099025,25099500-25099633,25099817-251000... 29 4.4
01_05_0604 - 23583244-23584989 29 4.4
07_03_1173 - 24526632-24526755,24527057-24527226,24527441-245275... 28 5.8
03_01_0177 + 1424773-1424850,1425307-1425391,1425498-1425577,142... 28 5.8
09_02_0221 + 5962606-5963197,5963711-5963837,5963994-5964100,596... 28 7.7
05_04_0243 + 19338682-19339038,19339751-19339867,19340360-193405... 28 7.7
>01_05_0166 + 18844468-18845184,18847394-18847690
Length = 337
Score = 86.6 bits (205), Expect(2) = 1e-20
Identities = 44/76 (57%), Positives = 59/76 (77%), Gaps = 2/76 (2%)
Frame = -1
Query: 225 PSKVVLLRNMVGPGDVDEELEPEVKDECNTKYGEVVKVLIFEM--PNXPADEAVRRFVEC 52
P++V+LLRNMVGPG+VD+ELE EV EC +KYG V++VLIFE+ + PA+EAVR F+
Sbjct: 230 PTRVLLLRNMVGPGEVDDELEEEVASEC-SKYGTVLRVLIFEITQADFPAEEAVRIFILF 288
Query: 51 KRIEXAMKAGVELNGR 4
+R E A KA ++L GR
Sbjct: 289 ERAEEATKAMIDLEGR 304
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/36 (47%), Positives = 27/36 (75%)
Frame = -3
Query: 532 TASAGFSIGGYGASSVAAKIMAKYGFKEGQGLGKKE 425
++S+G +G G + A ++MA+ G+KEGQGLGK+E
Sbjct: 155 SSSSGLGLGAGGQMTAAQRMMARMGWKEGQGLGKQE 190
Score = 30.7 bits (66), Expect(2) = 1e-20
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -1
Query: 480 QR*WQNMDLRRVKGWVKKXQGMSVALQVEKTSKRGGRIIHEKDNNVMPPP 331
QR M + +G K+ QG++ L +KT +RGG I+ E + P
Sbjct: 172 QRMMARMGWKEGQGLGKQEQGITAPLVAKKTDRRGGVIVDENSSKQEKKP 221
>12_02_1111 - 26157796-26160330
Length = 844
Score = 36.3 bits (80), Expect = 0.022
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = -3
Query: 514 SIGGYGASSVAAKIMAKYGFKEGQGLGKKE 425
++G G+++ AK+MA G+K+G GLGK E
Sbjct: 176 ALGSLGSNTKVAKMMAMMGYKDGMGLGKNE 205
>05_04_0114 + 18090593-18092248
Length = 551
Score = 33.1 bits (72), Expect = 0.20
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 462 YFAIIFAATELAP*PPMENPADAVAC-GRAVIGGGDEDSVVREGGG 596
Y+A +F A E + PP P AC R V+G +D VVREG G
Sbjct: 383 YYAALFDALEASSTPPAAVPPHERACVERWVLGEEIKDIVVREGTG 428
>02_05_1041 -
33713561-33714564,33714844-33714904,33715640-33715951,
33716780-33716917
Length = 504
Score = 32.3 bits (70), Expect = 0.36
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = -3
Query: 532 TASAGFSIGGYGASSVAAKIMAKYGFKEGQGLG 434
T +A F+ + VA+K+MAK G++EG GLG
Sbjct: 292 TETAIFAKWEHHTRGVASKMMAKMGYREGMGLG 324
>01_05_0570 + 23347957-23348940,23349038-23349181,23349666-23350046
Length = 502
Score = 31.1 bits (67), Expect = 0.82
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 504 PPMENPADAVACGRAVIGGGDEDSVVREGGG 596
P M +PA C A GGGD+D EG G
Sbjct: 13 PGMRSPASPGGCLSAAFGGGDDDGEEGEGEG 43
>08_01_0473 -
4169754-4169938,4170039-4170121,4170297-4170347,
4170434-4170507,4170585-4170679,4171672-4171754,
4171848-4172104
Length = 275
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 480 AATELAP*PPMENPADAVACGRAVIGGGDEDSVVREGGG 596
AA++ AP PP E A G I DE V +GGG
Sbjct: 7 AASDPAPPPPPETEEQPAAAGGEEIAALDEQLAVADGGG 45
>01_06_1446 -
37409074-37409783,37409896-37409986,37410645-37411988,
37412062-37412709,37412801-37412852,37413141-37413214,
37414370-37414419,37414488-37414569,37414779-37414828,
37414907-37414949,37415030-37415110,37415198-37415243,
37415336-37415382,37415467-37415532,37415612-37415678,
37415761-37415858
Length = 1182
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -1
Query: 399 VEKTSKRGGRIIHEKDNNVMPPPGFTMQAPA 307
+++ +K R +H DN+++ PPGF M P+
Sbjct: 543 IKERAKSPCRPVHGPDNDIIEPPGFPMAPPS 573
>10_06_0088 - 10538037-10539463,10539696-10539789
Length = 506
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = -3
Query: 553 ITALPQATASAGFSIGGYGASSVAAKIMAKYGFKEGQGLG 434
+T+LP+ S G IG Y A+ + AK+ YG++ GLG
Sbjct: 142 LTSLPEICISFGILIG-YVANYLLAKLPLVYGWRAMLGLG 180
>08_02_0036 -
11455762-11455802,11455996-11456104,11456207-11456854,
11457422-11457491,11458563-11458624,11458729-11458803,
11459423-11459514,11460233-11461466
Length = 776
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Frame = -3
Query: 511 IGGYGA-----SSVAAKIMAKYGFKEGQGLGKKEXRNVGGLASREDF 386
IGG G+ +K+MA+ GF EG GLGK V L + +F
Sbjct: 685 IGGVGSFERHTKGFGSKMMARMGFVEGSGLGKDGQGIVNPLTAPLEF 731
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = -3
Query: 481 AKIMAKYGFKEGQGLGK 431
+K+MAK GF EG GLGK
Sbjct: 615 SKMMAKMGFIEGTGLGK 631
>04_03_0279 + 13824006-13825490
Length = 494
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -3
Query: 544 LPQATASAGFSI-GGYGASSVAAKIMAKYGFKEGQGLGKKEXRNVGGLASR 395
+P A A+ G + G + VA ++M G +G G G +E RNV LAS+
Sbjct: 410 VPTAMATGGHGVVGSEVIARVARELMMMAGEGKGGG-GGEEARNVAALASK 459
>04_04_0489 + 25600543-25601368,25601441-25602282
Length = 555
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 508 GGYGASSVAAKIMAKYGFKEGQGLGK 431
G + + A++MA+ ++EG GLGK
Sbjct: 94 GSMATNQIVARLMAQMNYEEGTGLGK 119
>04_04_0422 +
25098612-25099025,25099500-25099633,25099817-25100067,
25100130-25100494
Length = 387
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 508 GGYGASSVAAKIMAKYGFKEGQGLGK 431
G + + A++MA+ ++EG GLGK
Sbjct: 27 GSLATNQIVARLMAQMNYEEGTGLGK 52
>01_05_0604 - 23583244-23584989
Length = 581
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 508 GGYGASSVAAKIMAKYGFKEGQGLGK 431
G + + A++MA+ ++EG GLGK
Sbjct: 93 GSLATNQIVARLMAQMNYEEGAGLGK 118
>07_03_1173 -
24526632-24526755,24527057-24527226,24527441-24527506,
24527858-24527953,24528340-24528438,24528730-24528819,
24529016-24529111,24529561-24529654,24530254-24530351,
24530395-24530679
Length = 405
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = +1
Query: 310 GRLHCKAWWWHHVIV-FLMN 366
GRLHC WW +V F+MN
Sbjct: 256 GRLHCLLPWWEDALVDFMMN 275
>03_01_0177 +
1424773-1424850,1425307-1425391,1425498-1425577,
1425771-1425898,1425962-1426049,1426187-1426277,
1426712-1426881,1427151-1427438,1427527-1427643,
1427924-1427976,1428029-1428090,1429042-1429118,
1429269-1429322,1429417-1429476,1429581-1429658,
1429805-1429851,1429933-1430051,1430280-1430364,
1430443-1430557,1430662-1430784,1430869-1430969,
1431346-1431475
Length = 742
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 505 GYGASSVAAKIMAKYGFKEGQGLGK 431
G S A ++M + G++EG+GLGK
Sbjct: 12 GIARQSAAFRLMKQMGWEEGEGLGK 36
>09_02_0221 +
5962606-5963197,5963711-5963837,5963994-5964100,
5964185-5964328,5964700-5964822,5964921-5965103,
5965540-5965718,5965797-5965823
Length = 493
Score = 27.9 bits (59), Expect = 7.7
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = -3
Query: 496 ASSVAAKIMAKYGFKEGQGLGKK 428
A ++ K+++K G++EG+GLG +
Sbjct: 410 ADNIGHKLLSKMGWREGEGLGSE 432
>05_04_0243 +
19338682-19339038,19339751-19339867,19340360-19340596,
19340926-19341078,19341188-19341263,19341600-19341626,
19342188-19342252,19342830-19342904,19343306-19343449,
19343550-19343600
Length = 433
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 543 RAVIGGGDEDSVVREGGGAIATPVALF 623
RA +GG + V+R GA ATP+ F
Sbjct: 76 RAAVGGAGPEQVLRLISGAAATPICQF 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,941,872
Number of Sequences: 37544
Number of extensions: 328282
Number of successful extensions: 1102
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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