Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_F23
(666 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 55 5e-08
Z73427-7|CAA97799.1| 371|Caenorhabditis elegans Hypothetical pr... 45 6e-05
U41007-19|AAA82274.1| 432|Caenorhabditis elegans Hypothetical p... 33 0.18
AL132860-26|CAB60511.2| 700|Caenorhabditis elegans Hypothetical... 29 3.9
AL032649-4|CAA21703.2| 511|Caenorhabditis elegans Hypothetical ... 29 3.9
AL032649-3|CAA21702.2| 502|Caenorhabditis elegans Hypothetical ... 29 3.9
AC006620-5|AAF39776.2| 328|Caenorhabditis elegans Hypothetical ... 29 3.9
U14635-13|AAC46654.2| 322|Caenorhabditis elegans Hypothetical p... 27 9.1
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 54.8 bits (126), Expect = 5e-08
Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Frame = -1
Query: 246 ITEIMKTP-SKVVLLRNMVGPGDVDEELEPEVKDECNTKYGEVVKVLIFEMPNXPADEAV 70
+T++M+T S V++LRNMV P D+DE LE E+++EC KYG V+ V+I N + V
Sbjct: 648 MTKLMRTNRSNVIVLRNMVTPQDIDEFLEGEIREECG-KYGNVIDVVI---ANFASSGLV 703
Query: 69 RRFVECKRIEXAMKAGVELNGR 4
+ FV+ +A L+GR
Sbjct: 704 KIFVKYSDSMQVDRAKAALDGR 725
>Z73427-7|CAA97799.1| 371|Caenorhabditis elegans Hypothetical
protein F58B3.7 protein.
Length = 371
Score = 44.8 bits (101), Expect = 6e-05
Identities = 46/151 (30%), Positives = 65/151 (43%), Gaps = 5/151 (3%)
Frame = -1
Query: 441 GWVKKXQGMSVALQVEKTSKRGGRIIHEKDNNVMPPPGFTMQAPAGPDXXXXXXXXXXXS 262
G K QGMS AL +EKT RGG I+ E AP P
Sbjct: 227 GLGKSEQGMSTALSIEKTGVRGGNIVAE--------------APKAPTFAT--------- 263
Query: 261 RNEPSITEIMKTPSKVVLLRNMVGPGDVD-----EELEPEVKDECNTKYGEVVKVLIFEM 97
+ E ++ +K++ L N+ +V +E E+K+E K G+VV V++
Sbjct: 264 ----NSMEAVQNATKILQLWNLTDLSEVSGEEGKKEFADEIKEEME-KCGQVVNVIVHVD 318
Query: 96 PNXPADEAVRRFVECKRIEXAMKAGVELNGR 4
+ D VR FVE A+KA V +NGR
Sbjct: 319 ESQEEDRQVRVFVEFTNNAQAIKAFVMMNGR 349
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = -3
Query: 487 VAAKIMAKYGFKEGQGLGKKE 425
+AA IM ++G+KEG GLGK E
Sbjct: 212 IAANIMKRHGYKEGAGLGKSE 232
>U41007-19|AAA82274.1| 432|Caenorhabditis elegans Hypothetical
protein C33H5.17 protein.
Length = 432
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 511 IGGYGASSVAAKIMAKYGFKEGQGLGKKEXRNVGGLASR 395
+G + V K+M K G+K G+GLGK+ V + +R
Sbjct: 243 LGKWNGGGVGMKLMMKMGYKVGEGLGKRSDGIVHAIQAR 281
>AL132860-26|CAB60511.2| 700|Caenorhabditis elegans Hypothetical
protein Y56A3A.32 protein.
Length = 700
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -1
Query: 198 MVGPGDVDEELEPEVKDECNTKYGEVVKV-LIFEMPNXPADEAVRRFVECKRIEXAMKAG 22
++G G + EL +K KYGE V+V +FE PA++ + + K IE K G
Sbjct: 415 IIGNGLLASELSYSIK----RKYGENVEVHQVFE-EKYPAEDILPEHIAQKSIEAIRKGG 469
Query: 21 VEL 13
V++
Sbjct: 470 VDV 472
>AL032649-4|CAA21703.2| 511|Caenorhabditis elegans Hypothetical
protein Y55D9A.2b protein.
Length = 511
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -3
Query: 496 ASSVAAKIMAKYGFKEGQGLGKKEXRNVGGLAS 398
+ +V K++ G+ EGQGLGK++ +V +A+
Sbjct: 433 SGNVGFKLLKSMGWSEGQGLGKEKQGHVEPVAT 465
>AL032649-3|CAA21702.2| 502|Caenorhabditis elegans Hypothetical
protein Y55D9A.2a protein.
Length = 502
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -3
Query: 496 ASSVAAKIMAKYGFKEGQGLGKKEXRNVGGLAS 398
+ +V K++ G+ EGQGLGK++ +V +A+
Sbjct: 433 SGNVGFKLLKSMGWSEGQGLGKEKQGHVEPVAT 465
>AC006620-5|AAF39776.2| 328|Caenorhabditis elegans Hypothetical
protein C51G7.5 protein.
Length = 328
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -1
Query: 198 MVGPGDVDEELEPEVKDECNTKYGEVVKV-LIFEMPNXPADEAVRRFVECKRIEXAMKAG 22
++G G + EL +K KYGE V+V +FE PA++ + + K IE K G
Sbjct: 147 IIGNGLLASELSYSIK----RKYGENVEVHQVFE-EKYPAEDILPEHIAQKSIEAIRKGG 201
Query: 21 VEL 13
V++
Sbjct: 202 VDV 204
>U14635-13|AAC46654.2| 322|Caenorhabditis elegans Hypothetical
protein C27H5.6 protein.
Length = 322
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 539 ASNRISWVLHRWLWR 495
A NR+SW RW WR
Sbjct: 121 AVNRVSWYRSRWTWR 135
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,085,700
Number of Sequences: 27780
Number of extensions: 265158
Number of successful extensions: 867
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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