Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_F22
(368 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0268 - 42411907-42411986,42412476-42412508,42413276-424133... 151 2e-37
03_05_0042 + 20180151-20180468,20181595-20181665,20182929-201830... 31 0.37
07_03_0471 + 18501496-18502104,18503009-18503260,18503367-185035... 29 1.5
02_02_0456 + 10489544-10491064,10491506-10491632,10491633-10492606 28 2.0
01_06_1364 + 36684937-36685281 28 2.0
02_01_0057 + 420812-421556,422473-422597,422622-422912,423357-42... 28 2.6
10_08_0796 + 20643667-20643912 27 4.6
08_01_1084 - 11120719-11120950,11121035-11121133,11122446-111228... 27 4.6
10_08_0935 + 21670372-21671396,21672057-21672987 27 6.1
10_01_0106 + 1317848-1318202,1318208-1318872,1318969-1319850,131... 27 6.1
08_02_0841 - 21749599-21749978,21750409-21753367 27 6.1
06_03_0559 + 22148773-22149210,22149478-22149684,22150065-221504... 27 6.1
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336... 27 6.1
08_02_0843 - 21759183-21759556,21760255-21762913 26 8.1
>01_07_0268 -
42411907-42411986,42412476-42412508,42413276-42413373,
42413499-42413596
Length = 102
Score = 151 bits (365), Expect = 2e-37
Identities = 71/81 (87%), Positives = 76/81 (93%)
Frame = -3
Query: 246 KVTFKITLTSDPKLPFKVLSVPEATPFTAVLKFAAEEFRVDPATSAIITDDGIGINPQQT 67
KV+FKI LTSDPKLPFKV SVPEA PFTAVLKFAAEEF+V P TSAIIT+DG+GINPQQ+
Sbjct: 16 KVSFKIILTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQS 75
Query: 66 AGNVFLKHGSELRLIPRDRVG 4
AGNVFLKHGSELRLIPRDRVG
Sbjct: 76 AGNVFLKHGSELRLIPRDRVG 96
>03_05_0042 +
20180151-20180468,20181595-20181665,20182929-20183087,
20183598-20183664,20183913-20184008,20184687-20184733,
20185113-20185193,20185704-20185806,20185967-20186028,
20187188-20187302,20193191-20195087,20195206-20195492
Length = 1100
Score = 30.7 bits (66), Expect = 0.37
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 186 VPEATPFTAVLKFAAEEFRVDPATSAIITDDGIGINPQQTAG 61
VP P A+ AA VDP++ ++ D IG+ + AG
Sbjct: 230 VPRKKPDPAIYLLAATTLGVDPSSCVVVEDSTIGLAAAKAAG 271
>07_03_0471 +
18501496-18502104,18503009-18503260,18503367-18503537,
18503693-18503743,18503868-18503960,18504125-18504220,
18504318-18504368,18504452-18504570,18504909-18505017,
18505391-18505513,18505590-18505661,18505963-18506034,
18506125-18506191,18506260-18506402,18506494-18506565,
18506632-18506760,18507317-18507472,18507579-18507692,
18507791-18507889,18507974-18508051,18508402-18508536,
18509081-18509155,18509247-18509361,18509458-18509828,
18509903-18509965,18510049-18510120,18510285-18510413,
18510512-18510628,18510902-18511018
Length = 1289
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -3
Query: 90 IGINPQQTAGNVFLKHGSELRLIPRDRV 7
IG+N ++ A VF K +ELRL+P D +
Sbjct: 378 IGLNKKRIAYFVFPKEDNELRLVPGDEL 405
>02_02_0456 + 10489544-10491064,10491506-10491632,10491633-10492606
Length = 873
Score = 28.3 bits (60), Expect = 2.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 190 KYFKRQFRIRCECNLESYFRHFKLYTNLKIYVQFRFPIYYKLQN 321
+YF+ F +C LES F NL+ Y F YY+++N
Sbjct: 502 RYFEDLFLYATKCALESLPSDFSKLINLQTYESVGF-AYYRMKN 544
>01_06_1364 + 36684937-36685281
Length = 114
Score = 28.3 bits (60), Expect = 2.0
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 129 VDPATSAIITDDGIGINPQQTAGNVFLKHGSELRL 25
+DP T I DDG + +QT V L+ GS + L
Sbjct: 67 LDPKTVKFIDDDGRFVRSEQTPEEVGLQDGSTISL 101
>02_01_0057 +
420812-421556,422473-422597,422622-422912,423357-423555,
423737-423800,423894-423957,424055-424135,424334-424420,
424492-424500
Length = 554
Score = 27.9 bits (59), Expect = 2.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 127 HPEFFSCKLQHCSEWSRFRHAKYFKRQF 210
+ + SC+L H +EW + H F RQ+
Sbjct: 151 YASWISCELPHRTEWPQVLHGNNFLRQW 178
>10_08_0796 + 20643667-20643912
Length = 81
Score = 27.1 bits (57), Expect = 4.6
Identities = 21/77 (27%), Positives = 32/77 (41%)
Frame = -3
Query: 252 MSKVTFKITLTSDPKLPFKVLSVPEATPFTAVLKFAAEEFRVDPATSAIITDDGIGINPQ 73
MS +T K+ + ++ + EAT A +K E P + G +
Sbjct: 1 MSMITVKVKTLTGKEVEVSI----EATETVARIKEQVEAAEGIPPPQQTLIYGGRQLADD 56
Query: 72 QTAGNVFLKHGSELRLI 22
TA L+HGSEL L+
Sbjct: 57 MTAEMCDLRHGSELHLV 73
>08_01_1084 -
11120719-11120950,11121035-11121133,11122446-11122849,
11123559-11124197
Length = 457
Score = 27.1 bits (57), Expect = 4.6
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -3
Query: 255 KMSKVTFKITLTSDPKLPFKVLSVPEATPFTAVLKFAAEEFRVDPATS 112
K S+++ I +S K P K P ATP VL+ + + P+TS
Sbjct: 33 KASELSAAIQSSSSSKRPKKQPPPPRATPIPVVLRRSLRTRGLPPSTS 80
>10_08_0935 + 21670372-21671396,21672057-21672987
Length = 651
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 92 PSSVIIALVAGSTLNSSAANFNTAVNGVASGTLSTLNGSFG 214
PS + +L A ++++SSAA+ + + +G S G FG
Sbjct: 161 PSCTVTSLSAKTSVSSSAASDGSGWSNSTAGAGSAAGGGFG 201
>10_01_0106 +
1317848-1318202,1318208-1318872,1318969-1319850,
1319856-1320200,1320286-1320294
Length = 751
Score = 26.6 bits (56), Expect = 6.1
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 206 SFGSDVSVILKVTFDILNYT 265
+ G+ VSV+LK FD LN+T
Sbjct: 520 NLGASVSVVLKDVFDKLNFT 539
>08_02_0841 - 21749599-21749978,21750409-21753367
Length = 1112
Score = 26.6 bits (56), Expect = 6.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 70 LLRIYADTVISDNSTGGRVHPEFFSCKL 153
LLR + ++S+NS G + PE +C+L
Sbjct: 303 LLRNLSQLLLSENSLSGPIPPEIGNCQL 330
>06_03_0559 +
22148773-22149210,22149478-22149684,22150065-22150471,
22150655-22151472,22151564-22151674,22151846-22152015
Length = 716
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 67 CLLRIYADTVISDNSTGGRVHPEFFSCKLQHCSEWSRF 180
CLLR+ D ++ + T VHP L++ + WS F
Sbjct: 513 CLLRLAHDIIVPKDPTFSEVHP-----NLENLAFWSHF 545
>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
3366324-3366449,3367056-3367262,3367399-3367492,
3367575-3367621,3367705-3368157,3368261-3368560,
3368656-3369114,3369189-3369410,3369659-3369890,
3370051-3370422,3371210-3371322,3371682-3371903,
3371977-3372180,3372308-3372572,3373123-3373311,
3373441-3373768,3373843-3374248,3374339-3374648,
3375677-3375837,3376825-3376998,3377265-3377609,
3377713-3377754,3378585-3378734,3378847-3379002,
3379088-3379540,3379651-3379966,3380402-3380839,
3381475-3381697,3383538-3383852,3384033-3384095,
3384699-3384903,3385362-3385425,3386014-3386204
Length = 3048
Score = 26.6 bits (56), Expect = 6.1
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -3
Query: 120 ATSAIITDDGIGINPQQTAGNVFLKHGSELRLIPRDRV 7
AT+ + DD +N + +G V G L + +DRV
Sbjct: 1939 ATNMLARDDSTEVNSNKDSGYVLKDSGYVLNFVQKDRV 1976
>08_02_0843 - 21759183-21759556,21760255-21762913
Length = 1010
Score = 26.2 bits (55), Expect = 8.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 70 LLRIYADTVISDNSTGGRVHPEFFSCKL 153
LLR + V+S NS G + PE +C+L
Sbjct: 206 LLRNLSYLVLSQNSLSGTIPPEIGNCQL 233
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,202,028
Number of Sequences: 37544
Number of extensions: 170673
Number of successful extensions: 546
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -