SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_F18
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    35   0.014
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    33   0.058
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    33   0.058
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    31   0.23 
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    30   0.41 
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    29   0.54 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.71 
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    29   0.94 
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    27   2.2  
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    27   2.9  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    26   5.0  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    26   6.6  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   6.6  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    26   6.6  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    26   6.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   6.6  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   6.6  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    26   6.6  
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    25   8.8  
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    25   8.8  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   8.8  
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    25   8.8  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 47/239 (19%), Positives = 94/239 (39%), Gaps = 3/239 (1%)
 Frame = -3

Query: 711 LQAPNSSAPXKTASMKTTGSAISSSNVLMESPQPSSARTVS-CSTLLSGRXXXXXXXXXX 535
           + + +SS     A   T+ S +SSS+V+  S  PSS+ + +  S+ LS            
Sbjct: 189 VSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSS 248

Query: 534 XXAIGLSSSPPSLTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXPAFTSTSTPVP 355
             +  LSSS  S T +  ++  S+   +   ++S T+             + TSTS+ + 
Sbjct: 249 STSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTIS 308

Query: 354 ASGPIPPEDKDVTNNKKKQRTA--SSAPKSSWLMPKDRXXXXXXXXXXXTANVSTYA*TV 181
           +S           ++     ++  SS+P SS                  T + S  + + 
Sbjct: 309 SSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSF 368

Query: 180 SSPVTSAAKSERFTMRRARNAMRLRTFADARTGTRTLRKPHQDPNRDLKPYSDTTLYYN 4
           SS V+S++ +   T+  + ++      + + + + +  K          P S +  Y+N
Sbjct: 369 SSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVS-SAFYHN 426


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 32.7 bits (71), Expect = 0.058
 Identities = 16/42 (38%), Positives = 28/42 (66%)
 Frame = -3

Query: 696 SSAPXKTASMKTTGSAISSSNVLMESPQPSSARTVSCSTLLS 571
           SS+   TAS+ T+ S +S+S +   SP P+++ T + S++LS
Sbjct: 94  SSSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILS 135


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 32.7 bits (71), Expect = 0.058
 Identities = 16/38 (42%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
 Frame = -3

Query: 678 TASMKTTGSAISSSNVLMESPQPS-SARTVSCSTLLSG 568
           T+S  +  S+ISSS+ ++ SP PS S+  +S S+++SG
Sbjct: 608 TSSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISG 645



 Score = 32.3 bits (70), Expect = 0.076
 Identities = 34/141 (24%), Positives = 58/141 (41%)
 Frame = -3

Query: 702 PNSSAPXKTASMKTTGSAISSSNVLMESPQPSSARTVSCSTLLSGRXXXXXXXXXXXXAI 523
           P SS+   ++S+ T  S ISSS++       SS  + S S+  S              + 
Sbjct: 546 PTSSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSS 605

Query: 522 GLSSSPPSLTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXPAFTSTSTPVPASGP 343
             +SSP S++ ++ ++   L  PTP  +TSS                 +S ST +P S  
Sbjct: 606 ASTSSPSSISSSISSSSTILSSPTP--STSSLMISSSSIISGSSSILSSSIST-IPISSS 662

Query: 342 IPPEDKDVTNNKKKQRTASSA 280
           +      V  +     ++SS+
Sbjct: 663 LSTYSSSVIPSSSTLVSSSSS 683



 Score = 26.2 bits (55), Expect = 5.0
 Identities = 33/142 (23%), Positives = 55/142 (38%), Gaps = 7/142 (4%)
 Frame = -3

Query: 672 SMKTTGSAISSSNVLMES-----PQPSSAR--TVSCSTLLSGRXXXXXXXXXXXXAIGLS 514
           S  T  SA  S+++++ S      QP+S R  T + S++ +              ++  S
Sbjct: 414 STSTLISASDSTSIIVSSYVSTVTQPASTRVQTTTVSSISTSVKQPTASVASSSVSVPSS 473

Query: 513 SSPPSLTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXPAFTSTSTPVPASGPIPP 334
           SS    +    ++  S   P    +TSS               A  STS+  P+S  I  
Sbjct: 474 SSVQPQSSTPISSSSSASSPQSTLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPSSSIISS 533

Query: 333 EDKDVTNNKKKQRTASSAPKSS 268
               V ++     T+SS+  SS
Sbjct: 534 PMTSVLSSSSSIPTSSSSDFSS 555



 Score = 25.4 bits (53), Expect = 8.8
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = -3

Query: 720 SXQLQAPNSSAPXKTASMKTTGSAISSSNVLMESPQPSSARTVSCSTL 577
           S  L A +SS+   T+   +T    SSSN L+ S   SSA  VS +T+
Sbjct: 720 SLSLTAMSSSSAIPTSVNSSTLITASSSNTLLSSITSSSA-IVSSTTV 766


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 1/147 (0%)
 Frame = -3

Query: 705 APNSSAPXKTASMKTTGSAISSSNVLMESPQPSSARTVSCSTLLSGRXXXXXXXXXXXXA 526
           A +SS     AS   T S+++SS++   +   +++ ++S ST+ S              +
Sbjct: 208 ATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSIS-STVSSSTPLTSSNSTTAATS 266

Query: 525 IGLSSSPPSLTHNVPAAM-DSLPIPTPLCATSSTTAXXXXXXXXXXXPAFTSTSTPVPAS 349
              +SS  S  +N  + +  S P  TPL + +STTA              TS ++    S
Sbjct: 267 ASATSS--SAQYNTSSLLPSSTPSSTPLSSANSTTA------TSASSTPLTSVNSTTTTS 318

Query: 348 GPIPPEDKDVTNNKKKQRTASSAPKSS 268
               P     + N     + SS P SS
Sbjct: 319 ASSTPLSSVSSANSTTATSTSSTPLSS 345



 Score = 30.7 bits (66), Expect = 0.23
 Identities = 26/118 (22%), Positives = 48/118 (40%)
 Frame = -3

Query: 720 SXQLQAPNSSAPXKTASMKTTGSAISSSNVLMESPQPSSARTVSCSTLLSGRXXXXXXXX 541
           S  L + NS+    +AS  ++ +  ++S++L  S   S+  + + ST  +          
Sbjct: 252 STPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTPLTSV 311

Query: 540 XXXXAIGLSSSPPSLTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXPAFTSTS 367
                   SS+P S   +  +   +    TPL + +STTA            + T+TS
Sbjct: 312 NSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTSVNSTTATS 369


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 375 STSTPVPASGPIPPEDKDVTNNKKKQRTASSAPK 274
           S+STP PAS   PP    ++++K   R+   +P+
Sbjct: 619 SSSTPTPASVLAPPSSASLSSSKDANRSVPESPR 652


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 20/44 (45%), Positives = 23/44 (52%)
 Frame = -3

Query: 699 NSSAPXKTASMKTTGSAISSSNVLMESPQPSSARTVSCSTLLSG 568
           NSS P K AS    G    SSN    S + SS+  VS S LL+G
Sbjct: 490 NSSMPHKPASQSNVGPVRISSN--RRSRKFSSSSRVSVSNLLAG 531


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 36/131 (27%), Positives = 47/131 (35%), Gaps = 7/131 (5%)
 Frame = -3

Query: 522 GLSSSPPSLTHNVP-AAMDSLPIPTPLCATSSTTAXXXXXXXXXXXPAFTSTSTP----- 361
           G SS    +T  VP  +  S  IP P  +TSST                TSTS P     
Sbjct: 239 GSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCT-TSTSIPPTGNS 297

Query: 360 -VPASGPIPPEDKDVTNNKKKQRTASSAPKSSWLMPKDRXXXXXXXXXXXTANVSTYA*T 184
             P +  +PP     T+      + SS   SS  +P              T N ST   T
Sbjct: 298 TTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGN-STTPVT 356

Query: 183 VSSPVTSAAKS 151
            + P TS + +
Sbjct: 357 PTVPPTSTSST 367


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 32/151 (21%), Positives = 60/151 (39%)
 Frame = -3

Query: 720 SXQLQAPNSSAPXKTASMKTTGSAISSSNVLMESPQPSSARTVSCSTLLSGRXXXXXXXX 541
           S    + +SS+P  +++  TT  + SSS+    S   SS+ + S S+  S          
Sbjct: 133 SSTTSSSSSSSPSSSSTTTTTSPSSSSSS---SSSSSSSSSSSSSSSSSSSSSSSSSSSS 189

Query: 540 XXXXAIGLSSSPPSLTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXPAFTSTSTP 361
               +   SSS  S + +VP    +    +   ++SS+++               S+ST 
Sbjct: 190 SSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTF 249

Query: 360 VPASGPIPPEDKDVTNNKKKQRTASSAPKSS 268
           +      P      T+++    TA+ A  +S
Sbjct: 250 ISTVTVTPSSSSSSTSSEVPSSTAALALNAS 280


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 23/102 (22%), Positives = 36/102 (35%)
 Frame = -3

Query: 627  MESPQPSSARTVSCSTLLSGRXXXXXXXXXXXXAIGLSSSPPSLTHNVPAAMDSLPIPTP 448
            ME PQ   +  V  ST  S R                +++ P + +     +++   PTP
Sbjct: 835  MEEPQHQDSSVVDVSTSASQRGSPVLSDLSKLTGSARNTAEP-VENTSAEPIENTSAPTP 893

Query: 447  LCATSSTTAXXXXXXXXXXXPAFTSTSTPVPASGPIPPEDKD 322
                +   A            A  + STP P   P+PP  +D
Sbjct: 894  FEIANKQQATEPISAPF----ATETISTPAPVKPPVPPSRRD 931


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
 Frame = -2

Query: 217 NDCQRFYV--CLNGVEPRDLGCQVGEVYNEESQK----CDAPENVR---GCEDWYKDSEE 65
           N C++  +  C+N      L C  GE+YN+ES K    C   E V     C   +K++EE
Sbjct: 209 NQCEKLVINACINPTTAT-LDCVNGELYNDESAKELFRCIIKECVDIFFKCIPLFKNNEE 267

Query: 64  A 62
           A
Sbjct: 268 A 268


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 670 YEDDRQCDKFFECVDGVATTKLCPDGLVFDPTIRK 566
           Y DD   ++  E V G   T +C   ++FD TIR+
Sbjct: 494 YLDDFPLEEIDEHVLGSTITLVCQQPVIFDMTIRE 528


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 36/164 (21%), Positives = 59/164 (35%), Gaps = 5/164 (3%)
 Frame = -3

Query: 726 RQSXQLQAPNSSAPXKTASMKTTGSAISSSNVLMESPQPSSARTVSCSTLLSGRXXXXXX 547
           R+S +    + SA   ++ ++ T +  SSS +    P P+   + S S LLS +      
Sbjct: 220 RESTEKPLLSVSALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSPLLSSQTVKTTT 279

Query: 546 XXXXXXAIGLSSSPPSLTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXPAFTST- 370
                    L SS    T N+  +   + +     +TS T              A TST 
Sbjct: 280 SNASRQPSPLVSS--KSTDNIIRSHSPVLLTPQTLSTSETKHIRPNNSTPYQRRAETSTK 337

Query: 369 ----STPVPASGPIPPEDKDVTNNKKKQRTASSAPKSSWLMPKD 250
               +TP     P  P  +     ++   +A  A   S   PK+
Sbjct: 338 PKAVATPQKVEAPSAPRLQKRAPRQQSNDSAVLAKLQSICNPKN 381


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 260 INQLLFGALEAVLCFFLLFVTSLSSG 337
           I       LE +LCFFL++ T+ S G
Sbjct: 47  IRDSFLSQLENILCFFLVYRTTYSFG 72


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 342 IPPEDKDVTNNKKKQRTASSAPKSSWLMPKD 250
           +PPE +++  + +KQ+      K SWL  +D
Sbjct: 162 LPPEHRNIWFDMEKQKKEELKNKHSWLYNED 192


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 675 ASMKTTGSAISSSNVLMESPQPSSART 595
           +S   T S +S++N L +SP+ S ART
Sbjct: 356 SSKNQTNSYLSAANRLQDSPKISKART 382


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 18/77 (23%), Positives = 27/77 (35%)
 Frame = -3

Query: 486  VPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXPAFTSTSTPVPASGPIPPEDKDVTNNK 307
            VP+    +PIPT       +++           P+    S P P+  P  P    +    
Sbjct: 1036 VPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVP 1095

Query: 306  KKQRTASSAPKSSWLMP 256
            K    A   PK S  +P
Sbjct: 1096 KPSVAAPPVPKPSVAVP 1112


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 454 DPSVCNIFYNCIEGEATEVKC 392
           +P  CN+ Y CIE +     C
Sbjct: 176 EPVKCNLCYECIESDELRANC 196


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 69  SESLYQSSHPRTFSGASHFWLSSL*TSPTWQPRSR 173
           ++ L +S HP + SG S+ +++S      WQ R R
Sbjct: 728 NDKLIKSIHPGSLSGISNSFVNSKHPIEQWQSRLR 762


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 257 GINQLLFGALEAVLCFFLLFVTSLSSGGIGPDAG 358
           GI    +GA   +L F   F  S+   G  PDAG
Sbjct: 480 GIYGACYGAFIIILVFITEFYVSIFPIGASPDAG 513


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = +3

Query: 573 IVGSNTRPSGQSLVVATPSTHSKNLSHCLSSSYWPSLXGHLNWALAIA 716
           I+ +   PS  S +V      +  L  C + +   ++ GH NW   +A
Sbjct: 137 IISAQFSPSTSSRLVTGSGDFTARLWDCDTQTPIATMKGHTNWVSCVA 184


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -3

Query: 699  NSSAPXKTASMKTTGSAISSSNVLMESPQPSSARTVS-CSTLLS 571
            NSS P  ++S+  + + ISSS V+  S    S+  +S  S+++S
Sbjct: 3463 NSSTPITSSSVLNSSTPISSSTVITSSVVIGSSSVLSYASSIVS 3506


>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 378 TSTSTPVPASGPIPPEDKDVTNNKKKQRTASSAPKSS 268
           TSTSTP  A+ P P     V   K +  +++ A  +S
Sbjct: 77  TSTSTPKSAASPAPNPPASVPEKKVEAPSSTVAESTS 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,098,903
Number of Sequences: 5004
Number of extensions: 66491
Number of successful extensions: 307
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -