Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_F18
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    27   0.25 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   1.8  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   5.4  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   5.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   5.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.4  

>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
 Frame = -3

Query: 363 PVPASGPIPPEDKDVTN-----NKKKQRTASSAPKSSWLMPKDR 247
           P P    + PE K++ N     N  K+ TAS A K  W+  ++R
Sbjct: 132 PSPEWDTVTPEAKNLINQMLTVNPSKRITASEALKHPWICQRER 175


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 336 AESGQTQVPEYSSK*RPAVHLTSVASP 416
           AES  +  P++  +  P+ HL  ++SP
Sbjct: 35  AESSASNSPDHYERFSPSTHLMDLSSP 61


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 187 NGVEPRDLGCQVGEV 143
           NG++P  LGC V  +
Sbjct: 211 NGIDPLPLGCPVNAI 225


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 558 LLIFLIVGSNTRPSGQSLVVATPSTHSKNL 647
           LL FL++ S TRPS  +   A PS+   N+
Sbjct: 7   LLFFLLLSSCTRPSRGN---AVPSSQRGNV 33


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 558 LLIFLIVGSNTRPSGQSLVVATPSTHSKNL 647
           LL FL++ S TRPS  +   A PS+   N+
Sbjct: 7   LLFFLLLSSCTRPSRGN---AVPSSQRGNV 33


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 50  GSWCGFLRVLVPVL 91
           G W G L+ LVP+L
Sbjct: 290 GHWSGCLQFLVPML 303


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 50  GSWCGFLRVLVPVL 91
           G W G L+ LVP+L
Sbjct: 258 GHWSGCLQFLVPML 271


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 500 LGGLELSPIAAVYVEGLVAFVD 565
           L G ++  I  +Y+E L A+VD
Sbjct: 492 LEGWKVEKIQEIYLEALRAYVD 513


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,574
Number of Sequences: 438
Number of extensions: 4658
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)