Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_F16
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    29   0.48 
SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20 |Schizosacc...    25   7.9  

>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
 Frame = -1

Query: 613 NEESXVEIENL-VIEMTTFKNTYNETLQCDNMLYLPISVRVNKLPLDPTNYT-FVEESPI 440
           N E+ V I +   ++ +T    Y  + Q DN + LP   R+    ++PT  T F  +S +
Sbjct: 494 NIETPVRILSCRCVKDSTLLPPYESSSQGDNQVLLPCPCRLATTHVEPTEVTAFTTQSVL 553

Query: 439 TSNGSEKTKNEATATIIDRTKFLFKL---NKPQID 344
            S  S  +     A  I R   LF++   N P  D
Sbjct: 554 AS--SAPSAGRPAAAQISRPAQLFRIPSTNPPPFD 586


>SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 290

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = -1

Query: 454 EESPITSNGSEKT--KNEATATIIDRTKFLFKLNKPQIDLVAFGIWGRLFLNDFDHSNNE 281
           EE+P+ S   + T  ++      +D TK   K  K Q+DL       + F      SN  
Sbjct: 17  EETPLASKSFDPTLFQHARRKLSVDSTKKSPKRLKRQVDLQKSSFNDKTFNESDVISNER 76

Query: 280 SKSNMLL 260
            KSN LL
Sbjct: 77  FKSNDLL 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,226,461
Number of Sequences: 5004
Number of extensions: 37819
Number of successful extensions: 92
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)