Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_F16
         (700 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC078665-1|AAH78665.1|  775|Homo sapiens GRIP and coiled-coil do...    30   6.9  
BC014100-1|AAH14100.1|  775|Homo sapiens GRIP and coiled-coil do...    30   6.9  
AK025688-1|BAB15218.1|  434|Homo sapiens protein ( Homo sapiens ...    30   6.9  
AF525417-1|AAM91948.1|  775|Homo sapiens Golgi coiled coil prote...    30   6.9  

>BC078665-1|AAH78665.1|  775|Homo sapiens GRIP and coiled-coil
           domain containing 1 protein.
          Length = 775

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = -1

Query: 625 QRYXNEESXVEIENLVIEMTTFKNTYNETLQCDNMLYLPISVRVNKLPLDPTNYTFV--E 452
           Q    E+    +EN + E++    TY +  Q D +    +  R+ +L L+          
Sbjct: 355 QSQVEEQRVAALENQISEVSELLGTYEKAKQKDQLAIQKLKERILQLDLENKTLALAASS 414

Query: 451 ESPITSNGSEKT 416
            SP+ S+G E +
Sbjct: 415 RSPLDSHGEESS 426


>BC014100-1|AAH14100.1|  775|Homo sapiens GRIP and coiled-coil
           domain containing 1 protein.
          Length = 775

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = -1

Query: 625 QRYXNEESXVEIENLVIEMTTFKNTYNETLQCDNMLYLPISVRVNKLPLDPTNYTFV--E 452
           Q    E+    +EN + E++    TY +  Q D +    +  R+ +L L+          
Sbjct: 355 QSQVEEQRVAALENQISEVSELLGTYEKAKQKDQLAIQKLKERILQLDLENKTLALAASS 414

Query: 451 ESPITSNGSEKT 416
            SP+ S+G E +
Sbjct: 415 RSPLDSHGEESS 426


>AK025688-1|BAB15218.1|  434|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22035 fis, clone HEP08838. ).
          Length = 434

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = -1

Query: 625 QRYXNEESXVEIENLVIEMTTFKNTYNETLQCDNMLYLPISVRVNKLPLDPTNYTFV--E 452
           Q    E+    +EN + E++    TY +  Q D +    +  R+ +L L+          
Sbjct: 14  QSQVEEQRVAALENQISEVSELLGTYEKAKQKDQLAIQKLKERILQLDLENKTLALAASS 73

Query: 451 ESPITSNGSEKT 416
            SP+ S+G E +
Sbjct: 74  RSPLDSHGEESS 85


>AF525417-1|AAM91948.1|  775|Homo sapiens Golgi coiled coil protein
           1 protein.
          Length = 775

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = -1

Query: 625 QRYXNEESXVEIENLVIEMTTFKNTYNETLQCDNMLYLPISVRVNKLPLDPTNYTFV--E 452
           Q    E+    +EN + E++    TY +  Q D +    +  R+ +L L+          
Sbjct: 355 QSQVEEQRVAALENQISEVSELLGTYEKAKQKDQLAIQKLKERILQLDLENKTLALAASS 414

Query: 451 ESPITSNGSEKT 416
            SP+ S+G E +
Sbjct: 415 RSPLDSHGEESS 426


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,692,482
Number of Sequences: 237096
Number of extensions: 1124349
Number of successful extensions: 1855
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1855
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)