Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_F13
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.12c |mug108||sequence orphan|Schizosaccharomyces pombe|...    27   3.0  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    27   4.0  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   6.9  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    25   9.2  

>SPAC29A4.12c |mug108||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 42  HHLVFHHWSSRARKPACPANSLQRFANEF 128
           HH+  H +S R R P+   +S   + NE+
Sbjct: 17  HHVDKHSFSGRQRHPSMGVHSFNEYMNEY 45


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 14  IPSHDFSHFSSLGLPSLVITGPQAGVSREFTTTL 115
           +P+H   H SS G+  L+ITGP  G    F   L
Sbjct: 752 VPNH--IHLSSDGVRCLLITGPNMGGKSSFVKQL 783


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 8   HKIPSHDFSHFSSLGLPSLVITG 76
           HK+PS   S+FS L   + ++TG
Sbjct: 763 HKMPSFVLSYFSDLAASNRILTG 785


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = +3

Query: 60  HWSSRARKPA---CPANSLQRFANEFN 131
           H S + +KPA   CPA  ++++ NEF+
Sbjct: 320 HHSGKFQKPALIVCPATLMKQWVNEFH 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,729,158
Number of Sequences: 5004
Number of extensions: 48860
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)