Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_F08
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...   262   4e-71
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...   261   7e-71
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...   222   4e-59
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar...    30   0.43 
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    29   0.75 
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    29   0.75 
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom...    28   1.7  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   2.3  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    27   3.0  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    27   4.0  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   5.3  
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    26   5.3  

>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score =  262 bits (642), Expect = 4e-71
 Identities = 120/219 (54%), Positives = 160/219 (73%), Gaps = 1/219 (0%)
 Frame = -2

Query: 701 PESVLKHXXXXXXXXXXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQ 522
           PES+LK            +    +++S+  KK+  I KRAE Y  EYR  ER++I LAR+
Sbjct: 16  PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARK 75

Query: 521 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLR 342
           AR  GNY+VP E KL FV+RIRGIN + PK RK++QL RL QINNG+FV+ NKA   ML+
Sbjct: 76  ARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQ 135

Query: 341 IAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEI 162
           + EPY+ +G PN K+VREL+YKRGF K++ QRIP++ N+I+E  L K++I+ VEDLIHEI
Sbjct: 136 VVEPYVTYGIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLIHEI 195

Query: 161 FTVGEKFKYASNFLWPFKLNNPTGGWR-KKTIHYVDGGD 48
           +TVG  FK A+NFLWPFKL++P GGWR +K  H+++GGD
Sbjct: 196 YTVGPNFKQAANFLWPFKLSSPLGGWRERKFKHFIEGGD 234


>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score =  261 bits (640), Expect = 7e-71
 Identities = 122/226 (53%), Positives = 164/226 (72%), Gaps = 1/226 (0%)
 Frame = -2

Query: 722 SKKLPAVPESVLKHXXXXXXXXXXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERD 543
           SK+    PES+LK           R+    +++++  KK+  I KRAE Y  EYR  ER+
Sbjct: 10  SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAERE 69

Query: 542 EIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNK 363
           +I L R+AR  GNYYVP E KL FVIRIRGIN + PK RK++QL RL QINNGVFV+ NK
Sbjct: 70  QIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNK 129

Query: 362 ATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICV 183
           AT  ML++ EPY+ +G PNLK+VREL+YKRGF K++ QRI ++ N+I+E  L K++I+ +
Sbjct: 130 ATKEMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSI 189

Query: 182 EDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWR-KKTIHYVDGGD 48
           EDLIHEI+TVG  FK A+NF+WPF+L++P GGWR +K  H+++GGD
Sbjct: 190 EDLIHEIYTVGPNFKQAANFIWPFQLSSPLGGWRDRKFKHFIEGGD 235


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score =  222 bits (543), Expect = 4e-59
 Identities = 104/217 (47%), Positives = 146/217 (67%), Gaps = 1/217 (0%)
 Frame = -2

Query: 701 PESVLKHXXXXXXXXXXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQ 522
           PE +LK           R++  + ++ +  K ++E FKRAE ++  YR +ER+ IRL R 
Sbjct: 15  PEVLLKKRKVNERTRKERVEQAIAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRS 74

Query: 521 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLR 342
           A+N+G+ +VP E KL FVIRI G+  + PK+RKVL+L RL +INN VFVR NKA   MLR
Sbjct: 75  AKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLR 134

Query: 341 IAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEI 162
           I EPY+ +G PNL SVREL+YKRGF K++GQRI ++ N+++E+ L K+++I +ED+IHEI
Sbjct: 135 IVEPYVMYGIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEI 194

Query: 161 FTVGEKFKYASNFLWPFKLNNPTGG-WRKKTIHYVDG 54
           + VG  FK  + FLWPF L         KK  H+ +G
Sbjct: 195 YNVGSHFKEVTKFLWPFTLTPVKHSLMEKKVKHFNEG 231


>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = -2

Query: 308 NLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVE-DLIHEIFTVGEKFKYA 132
           N KSV  +    G   L+G +I I+ +  ++ R+       VE +L H++  +    K+A
Sbjct: 143 NAKSVERIAEVSGNYALAGAQI-ISPSDCMDGRVKAIKQKLVELELSHKVCVISYSAKFA 201

Query: 131 SNFLWPFK 108
           S F  PF+
Sbjct: 202 SGFFGPFR 209


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 79  LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSL 213
           LR P   L  L+GH   +  L +SP  +     SST   +C+W L
Sbjct: 311 LRNPYQRLHTLEGHEDEVYGLEWSPHDEPILASSSTDRRVCIWDL 355


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = -2

Query: 620 SAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGN 504
           +++K+ REI ++ E+    +R+K ++  ++ + A N GN
Sbjct: 151 TSLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189


>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 188

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 66  MNGLLAPTTSWIVQFEGPQEITRVLELFSNSE 161
           MNGL  P   W +   GP  + R++  F   E
Sbjct: 75  MNGLPGPYVKWFLNSVGPDGLYRMVSAFDTKE 106


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +3

Query: 39   GYKVSAVDIMNGLLAPTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLN 185
            G K+ A+ I++  L       VQ +   E+ ++  LF NSED+M + L+
Sbjct: 1750 GIKIGALQIISFFLKNVPEITVQHQ--TEMLKMCSLFGNSEDVMIKQLS 1796


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
            transporting Cta4 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1211

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -2

Query: 521  ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRL 402
            + N+G YY  G   +AFV  I G+ + SP++   LQL ++
Sbjct: 1133 SENKGMYY--GLLGIAFVA-IAGVTEFSPELNAKLQLVKM 1169


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +3

Query: 135 VLELFSNSEDLMDEVLNTDNVVFVEPLLNNAVGSDWYTLSTQLGESTFVY*LTDTL*VGV 314
           +L +F+  +D M   L T+N +    +L +A    W TL    G + F Y     L +G+
Sbjct: 319 LLPIFNKVQDRMRYSLLTNNAIVFALVLGSAFYHSWITLG--CGNANFYYASNLILALGL 376

Query: 315 S 317
           S
Sbjct: 377 S 377


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -2

Query: 587 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 486
           +A Q   ++ +     +RL     N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342


>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +3

Query: 465 DDKCQFGFPRNVVVAA-IAC 521
           D  CQ GF RN+V+ A +AC
Sbjct: 327 DRLCQLGFDRNIVIQAYLAC 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,120,752
Number of Sequences: 5004
Number of extensions: 66281
Number of successful extensions: 179
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)