Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_F06
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    26   4.6  
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...    26   4.6  

>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 8/34 (23%), Positives = 19/34 (55%)
 Frame = +1

Query: 1   SFKISVHGIKLSLIFXIFSYKFVICTXNQHYKVL 102
           S++IS H ++L +   + S  ++ C   +H+  +
Sbjct: 389 SYRISAHHVELLMALVVCSRNYMRCNLQEHHNAI 422


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 685 LNLMKGFIIIHNVKEH 638
           +NL K FI + NVKEH
Sbjct: 39  MNLKKAFIFLDNVKEH 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,484,215
Number of Sequences: 5004
Number of extensions: 46583
Number of successful extensions: 86
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)