Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_F02
(380 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50109-2|CAA90434.1| 105|Caenorhabditis elegans Hypothetical pr... 79 8e-16
AF304121-1|AAG50234.1| 105|Caenorhabditis elegans 60S ribosomal... 79 8e-16
Z47812-3|CAA87790.1| 158|Caenorhabditis elegans Hypothetical pr... 33 0.069
Z83125-4|CAB05616.1| 376|Caenorhabditis elegans Hypothetical pr... 28 2.6
AF026201-1|AAB71239.1| 113|Caenorhabditis elegans Hypothetical ... 27 4.5
Z83319-2|CAB05904.2| 433|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z74032-4|CAA98463.2| 404|Caenorhabditis elegans Hypothetical pr... 27 6.0
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p... 27 6.0
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p... 27 6.0
U23455-6|AAC46536.2| 518|Caenorhabditis elegans Hypothetical pr... 26 7.9
AJ010708-1|CAA09308.1| 1158|Caenorhabditis elegans calcium ATPas... 26 7.9
AF125446-4|AAD12806.2| 1158|Caenorhabditis elegans Hypothetical ... 26 7.9
>Z50109-2|CAA90434.1| 105|Caenorhabditis elegans Hypothetical
protein C09H10.2 protein.
Length = 105
Score = 79.4 bits (187), Expect = 8e-16
Identities = 41/75 (54%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Frame = -1
Query: 314 MVNVPKQRRTYXXXXXXXXXXXV-SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 138
MVNVPK RRT+ +QYKK KE AQGRRRYDRKQ G+GGQ+KPIF
Sbjct: 1 MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60
Query: 137 XXXXXKIVLRLECAD 93
KIVLR+EC +
Sbjct: 61 AKTTKKIVLRMECTE 75
Score = 51.6 bits (118), Expect = 2e-07
Identities = 22/51 (43%), Positives = 33/51 (64%)
Frame = -2
Query: 154 PSSKRRQKPLRKLCSVLSVLIXKVRSQVALKRCKHFELGGDKKRKGQMIQF 2
P +++ K +K+ + K + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 55 PIFRKKAKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105
>AF304121-1|AAG50234.1| 105|Caenorhabditis elegans 60S ribosomal
protein L44 L41 protein.
Length = 105
Score = 79.4 bits (187), Expect = 8e-16
Identities = 41/75 (54%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Frame = -1
Query: 314 MVNVPKQRRTYXXXXXXXXXXXV-SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 138
MVNVPK RRT+ +QYKK KE AQGRRRYDRKQ G+GGQ+KPIF
Sbjct: 1 MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60
Query: 137 XXXXXKIVLRLECAD 93
KIVLR+EC +
Sbjct: 61 AKTTKKIVLRMECTE 75
Score = 51.6 bits (118), Expect = 2e-07
Identities = 22/51 (43%), Positives = 33/51 (64%)
Frame = -2
Query: 154 PSSKRRQKPLRKLCSVLSVLIXKVRSQVALKRCKHFELGGDKKRKGQMIQF 2
P +++ K +K+ + K + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 55 PIFRKKAKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105
>Z47812-3|CAA87790.1| 158|Caenorhabditis elegans Hypothetical
protein T05H10.3 protein.
Length = 158
Score = 33.1 bits (72), Expect = 0.069
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 238 YCDTLCTLWHLHFLQYVLRCFGTFTIFEFVRHDINKRQKEH 360
YCD +C H F+ Y+ + G F F+ + + KR EH
Sbjct: 74 YCDIVCPKSHTVFISYIDQ--GHRACFNFITYQVEKRNDEH 112
>Z83125-4|CAB05616.1| 376|Caenorhabditis elegans Hypothetical
protein T15D6.5 protein.
Length = 376
Score = 27.9 bits (59), Expect = 2.6
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = -2
Query: 304 YQNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRVEDVMIVNSRVTVVSPNPSSKRRQKPL 125
Y +AGRT + + + KS R LP++++ + +V+ P S R+K L
Sbjct: 86 YSTTAGRTRDFGSRFRVSFADIQKSQRWLHLPKIKNPTWNRDILMIVASRPGSVSRRKVL 145
Query: 124 RK 119
RK
Sbjct: 146 RK 147
>AF026201-1|AAB71239.1| 113|Caenorhabditis elegans Hypothetical
protein D1079.1 protein.
Length = 113
Score = 27.1 bits (57), Expect = 4.5
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = +2
Query: 212 QRAFPW-TFCTVIPCVLCGIYIFC--STSCAVLVRSPFLSSFGTISTNV 349
QR++P+ TF + +LC +YI C S +V + FL +F + +NV
Sbjct: 30 QRSYPFQTFLAFLDFMLCALYIHCFGLLSISVEYKIAFLYNF-VMDSNV 77
>Z83319-2|CAB05904.2| 433|Caenorhabditis elegans Hypothetical
protein T02D1.6 protein.
Length = 433
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +2
Query: 164 DHRNPAVYDHNVFYPGQRAFPWTFCTVIPCVLCGIYIFCSTSCAVLV 304
+H V+ NV+ P Q P V+ VLC I C S + +
Sbjct: 38 NHTGGPVWVRNVYPPIQELQPKVLIVVVVFVLCFIVGVCGNSSIITI 84
>Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical
protein F10C2.4 protein.
Length = 1081
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -2
Query: 250 RYHSTKSPRKGTLPRV-EDVMIVNSR 176
+Y +TKS R+G LP + ED++ R
Sbjct: 612 QYFATKSKRRGLLPEILEDILAARKR 637
>Z74032-4|CAA98463.2| 404|Caenorhabditis elegans Hypothetical
protein F35B12.5 protein.
Length = 404
Score = 26.6 bits (56), Expect = 6.0
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = -2
Query: 301 QNSAGRTAKNVNATKYTRYHSTKSP--RKGTLPRVEDVMIVNSRVTVVSPNPSSKRRQKP 128
Q R + +NA + S +K T+P+ + + V +P R+QKP
Sbjct: 149 QEETARRQEELNAQNLVKMQELMSNFFQKITIPKQQAIEPVEKDKENFHESPRQSRQQKP 208
Query: 127 LRKLCSVLSVL 95
K+ S V+
Sbjct: 209 ASKIASAREVI 219
>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
protein F52C9.1a protein.
Length = 1336
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 226 LDFLYCDTLCTLWHLHFLQYVLRCFGTFTIFE 321
++ + C+T L FL +V C+GT T +
Sbjct: 736 IELIQCETSVKLLDRRFLMHVSICYGTHTFLD 767
>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
protein F52C9.1b protein.
Length = 1331
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 226 LDFLYCDTLCTLWHLHFLQYVLRCFGTFTIFE 321
++ + C+T L FL +V C+GT T +
Sbjct: 736 IELIQCETSVKLLDRRFLMHVSICYGTHTFLD 767
>U23455-6|AAC46536.2| 518|Caenorhabditis elegans Hypothetical
protein F55E10.7 protein.
Length = 518
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 245 IPCVLCGIYIFCSTSCAVLVRSPFLSSFGTISTNVKKSIGR 367
I C L ++I C+ A+L + + F T+ S+GR
Sbjct: 221 IVCYLVPLFIICAVYLAILHKLFIHTRFSTVGKKTSISLGR 261
>AJ010708-1|CAA09308.1| 1158|Caenorhabditis elegans calcium ATPase
protein.
Length = 1158
Score = 26.2 bits (55), Expect = 7.9
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = -2
Query: 193 MIVNS--RVTVVSP-NPSSKRRQKPLRKLCSVLSVLIXKVRSQVALKR 59
+++NS TVV+P NP +R Q + CS+L ++ RS L+R
Sbjct: 468 IVINSGYNSTVVTPKNPGEQRGQIGNKTECSLLGFIMDSGRSYEDLRR 515
>AF125446-4|AAD12806.2| 1158|Caenorhabditis elegans Hypothetical
protein R05C11.3 protein.
Length = 1158
Score = 26.2 bits (55), Expect = 7.9
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = -2
Query: 193 MIVNS--RVTVVSP-NPSSKRRQKPLRKLCSVLSVLIXKVRSQVALKR 59
+++NS TVV+P NP +R Q + CS+L ++ RS L+R
Sbjct: 468 IVINSGYNSTVVTPKNPGEQRGQIGNKTECSLLGFIMDSGRSYEDLRR 515
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,465,952
Number of Sequences: 27780
Number of extensions: 162689
Number of successful extensions: 589
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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