Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_E21
(535 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 30 0.25
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 25 0.67
SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5 |Schiz... 27 1.8
SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p... 26 4.1
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 26 4.1
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 25 5.4
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 25 5.4
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 25 7.1
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch... 25 9.4
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch... 25 9.4
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc... 25 9.4
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch... 25 9.4
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 25 9.4
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 29.9 bits (64), Expect = 0.25
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = -2
Query: 258 YTDDGVYNQRLVCPKNTDNSRKTLQQMISELYPEKSNVNLRTH---GVIIPPETPLQWLS 88
+TD V + L+CP + + + ++ L EKS+ + H V + E +++
Sbjct: 93 FTDSYVPGEALLCPDDPNLVNELFDDVLKRLREEKSDSGEQFHWDANVTLSQENKWSFIT 152
Query: 87 EHLSYPDNFL 58
+LS D FL
Sbjct: 153 GYLSRNDKFL 162
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 25.0 bits (52), Expect(2) = 0.67
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 171 ELYPEKSNVNLRTHGVIIPPETPLQWLSEHLSY 73
E Y S N+ G IPP T L W + L+Y
Sbjct: 78 EKYYVPSLKNVVHEGQTIPPPTVLPWYPDGLAY 110
Score = 21.8 bits (44), Expect(2) = 0.67
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -2
Query: 369 LWLGLQNDKFDQFWAINRRLMESHGDNDGFKH 274
L+ G ND+FD F R+ + + G++H
Sbjct: 37 LFRGKPNDEFDSFMEYMRKPLPTTFRICGYRH 68
>SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 261
Score = 27.1 bits (57), Expect = 1.8
Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 3/114 (2%)
Frame = -2
Query: 387 KKDHNQLWLGLQNDKFDQFWAINRRLMESHGDNDGFKHIPLRIYTDDGVYNQRLVCPKNT 208
K + + W + N + F I +++ S K IPL+IY + P +
Sbjct: 148 KAETDTYWNAILNHDYYDFRPIAIKILFSKS-----KFIPLKIYLGANAPIIQTSAPLGS 202
Query: 207 DNSRKTLQQMISELYPEKSN---VNLRTHGVIIPPETPLQWLSEHLSYPDNFLH 55
+ L + + +L+P V HG+ I ++ L L+ Y D FLH
Sbjct: 203 SLG-EFLNKRLPDLFPSCDKFLIVKPVIHGITIFLQSVLDELNRDFCYIDGFLH 255
>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 535
Score = 25.8 bits (54), Expect = 4.1
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -2
Query: 108 TPLQWLSEHLSYPDNF 61
+P+ W+ +HL YP NF
Sbjct: 510 SPIFWVFQHLFYPGNF 525
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 4.1
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -2
Query: 177 ISELYPEKSNVNLRTHGVIIP 115
+S LY + N+N++ H +I+P
Sbjct: 98 VSTLYEDSFNINVQIHSLILP 118
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -3
Query: 344 SLISFGLSTDVLWSHMVIMMDSNTYHLGFILMMVYT 237
+LIS G ++ +S V M+++T+H G I ++V T
Sbjct: 1310 TLISAGRIPNLDFSDSVTSMEASTFHDGSIRLVVVT 1345
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -3
Query: 461 STLYVYSERG*CTETQRTSDVNYAKKRITISY 366
+TL ++ +TQR+SDVN++++ T S+
Sbjct: 684 NTLRTVKDKSHVHDTQRSSDVNFSRQNGTRSH 715
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 25.0 bits (52), Expect = 7.1
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -2
Query: 213 NTDNSRKTLQQMISELYPEKSNVNLRTHGVIIPPETPLQWLSEHLSYP 70
NTD KTL EL P+K V ++ E P+ + + S P
Sbjct: 898 NTDRQPKTLTNSADELSPQKRRV--ENPKPVVKDEGPVSIVEDEESTP 943
>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 245
Score = 24.6 bits (51), Expect = 9.4
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -2
Query: 411 DK*CQLCKKKDHNQLWLGLQNDKFDQFWAINRRLMESHG 295
DK Q KKK+ L L++ + D FW L E G
Sbjct: 10 DKKIQKKKKKNTKSLQSSLESAENDPFWTDANELNELEG 48
>SPBC211.06 |gfh1||gamma tubulin complex subunit
Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 577
Score = 24.6 bits (51), Expect = 9.4
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 83 CSESHCRGVSGGMITP*VLRLTFDFSGYSSEIICCSVFL-LLSVF 214
CS + +GV I P VLR T ++E C FL L+S+F
Sbjct: 325 CSSNDVQGVVIDDILPVVLRKTISLLDLATEYGECVSFLKLVSIF 369
>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 24.6 bits (51), Expect = 9.4
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 424 VHQPLSL*TYNVLLLHLCLGNEEECLQGTX*SVLS 528
V LS TYNVL LC+ E+ L T +VL+
Sbjct: 241 VFPTLSQDTYNVLRACLCVSPEKRSLAKTREAVLA 275
>SPBC19F8.06c |meu22||amino acid permease, unknown
11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 24.6 bits (51), Expect = 9.4
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = -3
Query: 83 ISVTLTTFYICVYAEDIWG 27
+S+ ++ FY+ + A +IWG
Sbjct: 175 VSIWISVFYVIIIAINIWG 193
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 371 SYGLDYKMTSLISFGLSTDVL 309
SY +DY + LI+FGL V+
Sbjct: 161 SYRIDYHLERLINFGLKVAVV 181
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,139,084
Number of Sequences: 5004
Number of extensions: 41980
Number of successful extensions: 127
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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