Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_E21
         (535 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0128 - 930461-930828,931223-931369,931567-931704,931888-93...    42   3e-04
11_01_0768 - 6442332-6443792                                           32   0.25 
02_04_0022 - 18992517-18993033,18993119-18993360,18993535-189939...    28   4.1  
01_07_0034 - 40625755-40626268,40626358-40626599,40627034-406274...    28   4.1  
09_02_0339 + 7452967-7453068,7453281-7453339,7453889-7454701,745...    27   7.2  
10_08_0073 + 14657400-14657696,14658168-14658229,14658241-14658886     27   9.5  

>02_01_0128 -
           930461-930828,931223-931369,931567-931704,931888-931975,
           932068-932157,932249-932315,933411-933535,934079-934213
          Length = 385

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 17/35 (48%), Positives = 24/35 (68%)
 Frame = -1

Query: 535 WTLTVHFTKFPEDILLHCPNKDVVEAHYMSTVKEA 431
           W LTVHF  +P +IL  C  +D V+  YM+++KEA
Sbjct: 106 WNLTVHFRGYPSEILTLCDGEDSVKWSYMNSLKEA 140


>11_01_0768 - 6442332-6443792
          Length = 486

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 252 DDGVYNQRLVCPKNTDNSRKTLQQMISELYPE 157
           D  ++N+  VCPK TD   K  QQ++  L PE
Sbjct: 59  DPNIFNKEAVCPKTTD--EKACQQLVKVLPPE 88


>02_04_0022 -
           18992517-18993033,18993119-18993360,18993535-18993923,
           18995447-18995603
          Length = 434

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 171 ELYPEKSNVNLRTHGVIIPPETPLQWLSEHLSYPD 67
           + + +K++V L+   + IPP  P Q +  HL  PD
Sbjct: 202 QTFGQKNHVCLKEGSITIPPYAPPQKMQAHLIPPD 236


>01_07_0034 -
           40625755-40626268,40626358-40626599,40627034-40627422,
           40628119-40628227
          Length = 417

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 171 ELYPEKSNVNLRTHGVIIPPETPLQWLSEHLSYPD 67
           + + +K++V L+   + IPP  P Q +  HL  PD
Sbjct: 186 QTFGQKNHVCLKDGSITIPPYAPPQKMQAHLIPPD 220


>09_02_0339 +
           7452967-7453068,7453281-7453339,7453889-7454701,
           7455123-7455498,7455978-7456019
          Length = 463

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 252 DDGVYNQRLVCPKNTDNSR 196
           ++G +N R VCP N DN R
Sbjct: 203 NNGDFNARFVCPDNLDNRR 221


>10_08_0073 + 14657400-14657696,14658168-14658229,14658241-14658886
          Length = 334

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 351 NDKFDQFWAINRRLMESHGDNDGFKHIPLRIYTDDGVYNQRL 226
           +D  D  + I RR  + H ++DG +H  LR        NQ+L
Sbjct: 110 DDLRDDSFTIRRRRRDPHREDDGDRHRNLRHRASASDLNQKL 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,919,081
Number of Sequences: 37544
Number of extensions: 239660
Number of successful extensions: 597
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)